363 Works

Edwards Aquifer Twine Interface v10

Damian Wahlmeier, Allison Berti &

Edwards Aquifer Twine Interface v2

Damian Wahlmeier, Allison Berti &

All The Shenanigans

Steve Van Tuyl

Voice Perception Assessment

Cyril Pernet & Pascal Belin

Voice Perception Assessment

Cyril Pernet & Pascal Belin

Voice Perception Assessment

Cyril Pernet & Pascal Belin

Voice Perception Assessment

Cyril Pernet & Pascal Belin

AugmentingAssembly Scripts & Code

Researchers interested in studying and constructing transcriptomes, especially for non-model species, face the conundrum of choosing from a number of available de novo and genome-guided assemblers. None of the popular assembly tools in use today achieve requisite sensitivity, specificity or recovery of full-length transcripts on their own. Here, we present a comprehensive comparative study of the performance of various assemblers. Additionally, we present an approach to combinatorially augment transciptome assembly by using both de novo...

poly_wave_matrix.m

Michal Odstrcil
An example of code to create a PolyCDI (multiwavelength) sparse matrix

Matlab Code

Katie Cunningham
This code simulates changes in the Edwards Aquifer storage as it changes with user input.

Matlab Code

Katie Cunningham
This code simulates changes in the Edwards Aquifer storage as it changes with user input.

ultrathinmirror.seq

, , , Chen Xu & Yuan Hu
This is the lens file of the ultrathin mirror system presented in our paper

cv_uds_segasph.dll

, , , Chen Xu & Yuan Hu
This is *.dll file. It is used to interact with the design software. This is the UDSA programmed by us.

Bacterial and Archaeal Genome Analyser (BAGA) v0.2

David Williams
BAGA provides novel analyses and wrapped tools pipelined for convenient processing of genome sequences. This release is for reproduction of recombination analysis among Pseudomonas aeruginosa.

readme

Tong Luo
readme

MBDToolBox

& Anneleen Decock
MBDToolBoxMBDToolBox - Docker container to support the data descriptor paper describing an MBD-seq dataset on neuroblastoma samples.References:DNA-methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing (MBD-seq) Anneleen Decock, Maté Ongenaert, Wim Van Criekinge, Frank Speleman, Jo VandesompeleMethyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma Anneleen Decock, Maté Ongenaert, Robrecht Cannoodt, Kimberly Verniers, Bram De Wilde, Geneviève Laureys, Nadine Van Roy, Ana P. Berbegall, Julie Bienertova-Vasku, Nick Bown, Nathalie Clément, Valérie Combaret, Michelle...

The Evolution of Labile Traits in Sex- and Age-Structured Populations (R code)

Dylan Childs
Contains R code to implement the example in the manuscript, "The Evolution of Labile Traits in Sex- and Age-Structured Populations," submitted to Journal of Animal Ecology. Snapshot of the Github repository.

R Script for multilevel analysis

Guillermo Campitelli, Guillermo Macbeth, & Fernando Marmolejo-Ramos
Script for multilevel analysis and descriptive statistics.

Alignment Scoring Tool v0.3

Thomas Hain
Tool for scoring of alignment in the MGB challenge 2015. http://www.mgb-challenge.org/

VisualStatistics

Ryan Melvin & Freddie Salsbury
Python scripts for visualizing macromolecules and uncertainty

asio-files

Tim Sherratt
Code to harvest and process publicly accessible ASIO files from the National Archives of Australia.

denovogear

Reed Cartwright
A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

Plot line with shaded error bars

Jonathan Cannon
Function used for plotting by QIF simulations. (C) Kelly Kearney

Simulation 1

Jonathan Cannon & Jeffrey Markowitz
Matlab simulations of sequence generation model with I-to-I inhibition, quantifying and plotting spike synchronization, consistency of sequence timing, etc., both with and without I-to-E feedback inhibition.

Bibliometric Crawling-Framework

Asura Enkhbayar
A framework incorporating ropensci modules and several API's to crawl bibliographic data

Registration Year

  • 2015
    363

Resource Types

  • Software
    363