1,254 Works

CIVIS-YouPower

Sanja Scepanovic
This is the source code of the YouPower app as part of CIVIS project.

Anthropogenic Sound Bias Analysis

Alison Fairbrass
Script to investigate relationships between acoustic indices and measures of anthropogenic sounds using mixed-effects analysis and model selection.

Diversity Analysis

Alison Fairbrass
Script to investigate relationships between acoustic indices and measures of acoustic diversity using mixed-effects analysis and model selection.

Data Analysis Scripts for Characterising Cell Surface Morphology

Haig Alexander Eskandarian
The MatLab codes herein are used to characterise the undulating surface morphology of mycobacterial cells. Cell height profiles are extracted from the AFM height images and imported as .csv files into MatLab and classified in an array by cell name and time.
We use these scripts to analyse mycobacterial cell surface wave-form physiology, timing of when wave-troughs are formed in relation to when division site selection occurs within these structures. We also calculate basic cell physiological...

Additional file 11: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ attitudes

Timo Smieszek, Stefanie Castell, Alain Barrat, Ciro Cattuto, Peter White &
Contact analysis. (PY 67 kb)

GrainSizeTools script

Marco A. Lopez-Sanchez
GrainSizeTools script is a free open-source cross-platform script written in Python that provides several tools to visualize and characterize the grain size from thin sections. The script is suitable to use for paleopiezometry (paleowattmetry) studies and to derive the actual 3D grain size distribution using the Saltykov and the two-step methods. The script only requires measuring the grain sectional areas from a thin section and does not require a previous experience with Python programming language...

GrainSizeTools script

Marco A. Lopez-Sanchez
GrainSizeTools script is a free open-source cross-platform script written in Python that provides several tools to visualize and characterize the grain size from thin sections. The script is suitable to use for paleopiezometry (paleowattmetry) studies and to derive the actual 3D grain size distribution using the Saltykov and the two-step methods. The script only requires measuring the grain sectional areas from a thin section and does not require a previous experience with Python programming language...

Additional file 4: of CNV analysis in the Lithuanian population

, , , , , , , &
Programme for CNVR formation. Includes README_16_02_2014.txt file. (PY 12Â kb)

capital-markets-of-the-world

Michael Schiltz
looking at the birth and history of modern finance through stock exchange quotations, 1850-...

A GPU-Based Solution to Fast Calculation of Betweenness Centrality on Large Weighted Networks

We develop an efficient parallel GPU-based approach to boost the calculation of betweenness centrality on very large and weighted networks. Comprehensive and systematic evaluations on both synthetic and real-world networks demonstrate that our solution can arrive the performance of 30x to 150x speedup over the CPU implementation by integrating the work-efficient and warp-centric strategies.

GenomeAnalysisTK.jar

Ying Zhu
GATK 3.6RequirementsAll POSIX operating systems (Unix, Linux, MacOSX etc) are supported. Microsoft Windows is not supported. The current version requires Java 1.8. Note that the Oracle Java is preferred; OpenJDK is not officially supported.

Phase Transfer Entropy in Python / C

Matteo Fraschini, Arjan Hillebrand & Will Woods
Script to compute phase transfer entropy (PTE) in Python (with C extension for speed)

R code for the differential expression analyses

Zheng Zhao, , Wen Wang, Zheng Wang, & Tao Jiang
This ".R" format file contains the R code for differential expression analyses

IAP_UBONN_AtomObjective_780nm.len

Carsten Robens
OLSO lens-design file: lens system optimized for imaging Rubidium atoms (780 nm)

IAP_UBONN_AtomObjective_399nm.len

Carsten Robens
OLSO lens-design file: lens system optimized for imaging Ytterbium atoms (399 nm)

IAP_UBONN_AtomObjective_671nm.len

Carsten Robens
OLSO lens-design file: lens system optimized for imaging Lithium atoms (671 nm)

IAP_UBONN_AtomObjective_399nm.len

Carsten Robens
OLSO lens-design file: lens system optimized for imaging Ytterbium atoms (399 nm)

Supplementary macro 2 NUCLEI.ijm

Delyan Ivanov
Macro to automate the analysis of Diaminobenzidine/Haematoxylin stained immunohistochemsitry images of nuclear target proteins. The macro imports the images for analysis from one images-only folder into an image stack. It runs a minimum Z-projection to identify the smallest area containing all spheroids and allows the user to crop the extra white space. Afterwards the ImageJ Colour Deconvolution plug-in developed by G Landini based on the method of Ruifrok and Johnston is used to separate the...

Diffusion And Interaction Dynamics Simulation (DAIDS)

David Richter
A simple spatial diffusion-reaction model including a submicroscopic, semipermeable meshwork implemented in MATLAB (Version R2015a) verifing a critical role of the MSK in dynamically stabilizing transient (cytokine) receptor dimers.

Topo-phylogeny.zip

Jamie Waese, &
Topo-phylogeny is an alternative approach to displaying phylogenetic relationships. It visualizes each node of a tree as a point on a two-dimensional map, with the placement, surrounding color and distance from other nodes determined by its attraction to parent and sister nodes, branch length, and hierarchical level. Topographic contour shapes indicate which level related nodes are connected at. Gaps between clusters indicate clades from a different lineage.
This is a repository copy of the source code...

Trebuchet Optimization Code.zip

Jared Park
We performed an optimization on the design of a counterweight trebuchet with a fixed “footprint,” or projected area. For this project, we used research performed by others, re-deriving the equations of motion ourselves, to find the best design for throwing a set projectile the greatest distance. Design variables were short arm length, sling length, weight rope length, swing clearance, starting angle and release angle. The constraints were the footprint, the height of the pivot, and...

Final path plotting algorithm

Jenna Newcomb
Final algorithm that returns the flight path of UAV. Used in final optimization to find bank angles.

Medication Supports Review Course

Bjorn Pederson, Nancy McCulloh & Pam Stenhjem
Review module for direct support professionals, Colloge of Direct Support and the University of Minnesota

skedm

Nick Cortale
Scikit Empirical Dynamic Modeling (skedm) can be used as a way to forecast time series, spatio-temporal 2D or 3D arrays, and even discrete spatial arrangements. More importantly, skedm can provide insight into the underlying dynamics of a system, specifically whether a system is nonlinear and deterministic or whether it is dominated by noise.

Denny mortality model

Phil Martin
This is a model of forest dynamics created for a project looking at forest dieback in the New Forest, southern England.

Registration Year

  • 2017
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Resource Types

  • Software
    1,254