2,147 Works

matlab-code.zip

Juan Contreras
Matlab source of model presented in Lotero et al. (2019). Jorurnal of Geophysical Reserach Earth Surface DOI:https://doi.org/10.1029/2019JF005153

An example of applying R package ICcforest available on CRAN

This example uses the R package ICcforest available on CRAN to fit a conditional inference survival forest on the tooth data set from library bayesSurv. This example refers to the analysis in Section 4 of the paper, "An Ensemble Method for Interval-Censored Time-to-Event Data", available on arXiv (arXiv:1901.04599).

MATLAB software for automatic reading of Shimadzu HPLC pdf files and calculating concentration of different compounds

Wenfa Ng
Most high performance liquid chromatography (HPLC) instruments typically output chromatographic data of each sample either in Excel or pdf format. Given that multiple peaks are detected for each sample, significant amount of time is needed to manually compile peak area data for target compounds of different samples of an analysis run. Such an endeavor would require identifying the pertinent compounds from retention time information, extracting the peak area data of each compound, and finally calculating...

Summarising the extended peer community of spatial biodiversity planners in South Africa

Falko Buschke
This file contains the R-script to recreate Figure 2 from the manuscript "Post-normal conservation science fills the space between research, policy and implementation" (by F.T Buschke, E.A. Botts & S.P. Sinclair).
The figure summarises the demographic makeup of stakeholders who have taken part in the process of systematic conservation planning between 2004 and 2017.
The caption to the figure reads:
Figure 2: The structure and dynamics of the extended peer community of biodiversity planners in South Africa, inferred...

Summarising the extended peer community of spatial biodiversity planners in South Africa

Falko Buschke
This file contains the R-script to recreate Figure 2 from the manuscript "Post-normal conservation science fills the space between research, policy and implementation" (by F.T Buschke, E.A. Botts & S.P. Sinclair).
The figure summarises the demographic makeup of stakeholders who have taken part in the process of systematic conservation planning between 2004 and 2017.
The caption to the figure reads:
Figure 2: The structure and dynamics of the extended peer community of biodiversity planners in South Africa, inferred...

Metal Binding Site Identification Model

Frazier N Baker, Nicholas Maltbie, Joseph Hirschfeld & Aleksey Porollo
This is an HDF5 model designed to work with CoevFeat features for metal binding site prediction.

test.txt

TEST FIGSHARE

fastai

Jeremy Howard, Sylvain Gugger, Rachel Thomas, Stas Bekman, Francisco Ingham & Fred Monroe
The fastai deep learning library, plus lessons and tutorials https://docs.fast.ai/
The fastai library simplifies training fast and accurate neural nets using modern best practices. See the fastai website to get started. The library is based on research into deep learning best practices undertaken at fast.ai, and includes "out of the box" support for vision, text, tabular, and collab (collaborative filtering) models. For brief examples, see the examplesfolder; detailed examples are provided in the full documentation.

LBP study_CHS_UoN_Stata code

This is the do-file containing the syntaxes used for the data processing and analysis. Version 13 of Stata was used.

Eprime code

Bao Hong
Measurement of the Vertical Spatial Metaphor of Power Concepts Using the Implicit Relational Assessment Procedure

Code_new.rar

, Zhi Lu, , Hui Qiao, Tao Yan, , Xu Zhang, & You Zhou
Matlab code for "Phase-space deconvolution for light field microscopy"

Code_new.rar

, Zhi Lu, , Hui Qiao, Tao Yan, , Xu Zhang, & You Zhou
Matlab code for "Phase-space deconvolution for light field microscopy"

Permutation test for contaminated data and skewness analysis

Jaroslav Flegr & Petr Tureček
R script for permutation test for (false negatives) contaminated data. Supplementary material for the paper: New approach and new program for analyses of false negatives-contaminated data in medicine and biology. Authors of paper: Jaroslav Flegr & Petr Tureček, author of the script Petr Tureček
Abstract Background: No serological assay has 100% sensitivity. Statistically, the concentration of specific antibodies against antigens of parasites decreases with the duration of infection. This can result in false negative outputs of...

R Script On the diverse and opposing effects of nutrition on pathogen virulence .R

Victoria Pike, Katrina Lythgoe & Kayla King
This is the code to accompany the meta analysis found in the manuscript 'On the diverse and opposing effects of nutrition on pathogen virulence'.

LBP study_CHS_UoN_Stata code

This is the do-file containing the syntaxes used for the data processing and analysis. Version 13 of Stata was used.

Etch simulation code

Marcell Kiss
As supplementary information, we include the MATLAB code to execute the simulations we performed to investigate the crystallographic etch process. The main simulation is the comes first in the file, with supporting functions merged afterwards. The simulated mask geometry needs to supplied for the program in the same folder, and the name set in the simulation code.

Noisy park bench.py from Minimal descriptions of cyclic memories. 13 December 2018 7 May 2019

Joseph D. Paulsen & Nathan C. Keim
Simulation code for the park bench model, as a Python script. This code was used to generate the data for the manuscript that is also archived here in the ESM.

EwE tools for MSP user guide.pdf

Jeroen Steenbeek
The Maritime Spatial Planning (MSP) Challenge 2050 serious game is an immersive, three-dimensional software system that educates stakeholders, planners and the general public about trade-offs and environmental consequences of planning decisions in the marine and coastal ecosystem over space and time.

The MSP software outsources its ecological calculations to the Ecopath with Ecosim (EwE) food web modelling approach.Although this integration opens up the possibility to use a large number of EwE models for MSP game...

SOSLI

Sujit Kumar Sahoo
The data and code to do SOSLI.

R code: Coho survival manuscript analyses and figures

Ross Vander Vorste
R code to produce results and figures for Vander Vorste et al. 2019 manuscript in review
Data can be downloaded at: https://figshare.com/projects/From_refugia_to_ecological_traps_extreme_drought_threatens_persistence_of_an_endangered_fish_in_intermittent_streams/66611

ePSproc: Post-processing for ePolyScat (v1.1.0)

Paul Hockett
Post-processing suite for ePolyScat calculations.
Release v1.1.0 (30th Aug. 2019)
- Basic python functionality implemented.- Packaged & uploaded to Pypi.- Docs now on Read the Docs: https://epsproc.readthedocs.io
Further python codebase development is now in progress, check https://github.com/phockett/ePSproc for latest updates.

Release v1.0.0 (8th Aug. 2016)

ePSproc scripts are designed for photoionization studies, and specifically:
• Read raw photoionization matrix elements from ePS output files with "dumpIdy" segments
• Calculate MF-PADs from the matrix elements
• Plot MF-PADs
• Plot X-sects
The scripts are currently written...

ePSproc: Post-processing for ePolyScat (v1.0.0)

Paul Hockett
Post-processing suite for ePolyScat calculations.
Release v1.1.0 (30th Aug. 2019)
Basic python functionality implemented.Packaged & uploaded to Pypi.Docs now on Read the Docs: https://epsproc.readthedocs.io

Release v1.0.0 (8th Aug. 2016)

ePSproc scripts are designed for photoionization studies, and specifically:
• Read raw photoionization matrix elements from ePS output files with "dumpIdy" segments
• Calculate MF-PADs from the matrix elements
• Plot MF-PADs
• Plot X-sects
The scripts are currently written for Matlab. The distribution currently contains:
• a set of functions for processing (ePSproc*.m files)
• a...

HBM : Hierarchical GST partitioning (Stan encoded) - Code part 2: GST partitioning

Louise Brousseau
GST partitioning

Four code examples for turbulent phase screens simulation

Mikhail Charnotskii
Matlab codes for turbulent phase screens generation.Theory and description in the Preprint
M. Charnotskii "Four methods for generation of turbulent phase screens: comparison"and submitted paper to JOSA A

R codes exp 1 and 2 (including supplementary analyses)

Fernando Marmolejo-Ramos
These are the R codes used in the analyses of experiments 1 and 2. Supplementary analyses reports and codes are also available

Registration Year

  • 2019
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Resource Types

  • Software
    2,147