36 Works

sj-docx-1-qjp-10.1177_17470218221146540 – Supplemental material for Verbal deception in picture naming

Eduardo Navarrete, Marta De Pedis & Anna Lorenzoni
Supplemental material, sj-docx-1-qjp-10.1177_17470218221146540 for Verbal deception in picture naming by Eduardo Navarrete, Marta De Pedis and Anna Lorenzoni in Quarterly Journal of Experimental Psychology

Intimate partner violence and drug-addicted women: from explicative models to gender-oriented treatments

Alessandra Simonelli, Caterina E. Pasquali & Francesca De Palo
Thanks to studies conducted over the past decades, it has been underlined how harmful consumption of alcohol or other substances and intimate partner violence are intertwined. What has been recognized is, in particular, how the relation between these two factors may be represented as a vicious cycle in which each of them influences the other, reciprocally. The aim of this paper is to offer an overview, firstly, about the global and European scenario of the...

Intimate partner violence and drug-addicted women: from explicative models to gender-oriented treatments

Alessandra Simonelli, Caterina E. Pasquali & Francesca De Palo
Thanks to studies conducted over the past decades, it has been underlined how harmful consumption of alcohol or other substances and intimate partner violence are intertwined. What has been recognized is, in particular, how the relation between these two factors may be represented as a vicious cycle in which each of them influences the other, reciprocally. The aim of this paper is to offer an overview, firstly, about the global and European scenario of the...

Combined burden and functional impact tests for cancer driver discovery using DriverPower

Shimin Shuai, Federico Abascal, Samirkumar B Amin, Gary D Bader, Pratiti Bandopadhayay, Jonathan Barenboim, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach, J Lynn Fink, Nuno A Fonseca, Joan Frigola, Carlo Gambacorti-Passerini, Dale W Garsed … & L van’t Veer
The discovery of driver mutations is one of the key motivations for cancer genome sequencing. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumour types, we describe DriverPower, a software package that uses mutational burden and functional impact evidence to identify driver mutations in coding and non-coding sites within cancer whole genomes. Using a total of 1373 genomic features...

Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Federico Abascal, Samirkumar B Amin, Gary D Bader, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach … & L van’t Veer
Multi-omics datasets represent distinct aspects of the central dogma of molecular biology. Such high-dimensional molecular profiles pose challenges to data interpretation and hypothesis generation. ActivePathways is an integrative method that discovers significantly enriched pathways across multiple datasets using statistical data fusion, rationalizes contributing evidence and highlights associated genes. As part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumor types, we integrated...

Pathway and network analysis of more than 2500 whole cancer genomes

Matthew A Reyna, David Haan, Marta Paczkowska, Lieven PC Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose MG Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, Federico Abascal, Samirkumar B Amin … & L van’t Veer
The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past decade. However, non-coding cancer driver mutations are less well-characterized and only a handful of recurrent non-coding mutations, most notably TERT promoter mutations, have been reported. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancer across 38 tumor types, we perform multi-faceted pathway and network analyses of non-coding...

Pathway and network analysis of more than 2500 whole cancer genomes

Matthew A Reyna, David Haan, Marta Paczkowska, Lieven PC Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose MG Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, Federico Abascal, Samirkumar B Amin … & L van’t Veer
The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past decade. However, non-coding cancer driver mutations are less well-characterized and only a handful of recurrent non-coding mutations, most notably TERT promoter mutations, have been reported. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancer across 38 tumor types, we perform multi-faceted pathway and network analyses of non-coding...

Whole-brain Analysis from Neuroanatomical correlates of system-justifying ideologies: a pre-registered voxel-based morphometry study on right-wing authoritarianism and social dominance orientation

Jan Paolo M. Balagtas, Serenella Tolomeo, Bindiya L. Ragunath, Paola Rigo, Marc H. Bornstein & Gianluca Esposito
glass brain images using uncorrected voxel-level analysis of regions

sj-docx-2-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-2-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Federico Abascal, Samirkumar B Amin, Gary D Bader, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach … & L van’t Veer
Multi-omics datasets represent distinct aspects of the central dogma of molecular biology. Such high-dimensional molecular profiles pose challenges to data interpretation and hypothesis generation. ActivePathways is an integrative method that discovers significantly enriched pathways across multiple datasets using statistical data fusion, rationalizes contributing evidence and highlights associated genes. As part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumor types, we integrated...

sj-docx-3-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-3-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

sj-docx-3-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-3-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

sj-docx-5-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-5-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

sj-docx-1-jbm-10.1177_03936155231154663 - Supplemental material for Overordering of tumor marker for outpatients revealed by performance indicators and the impact of a health policy intervention: An observational study using administrative records

Massimo Gion, Roberto De Gobbi, Manuel Zorzi, Giovanni Carretta, Luca Leonardi, Stefano Guzzinati, Chiara Trevisiol, Maurizio Cancian, Giulia Cardinali, Federica Michieletto, Ruggero Dittadi, Aline S.C. Fabricio, Massimo Rugge & Francesca Russo
Supplemental material, sj-docx-1-jbm-10.1177_03936155231154663 for Overordering of tumor marker for outpatients revealed by performance indicators and the impact of a health policy intervention: An observational study using administrative records by Massimo Gion, Roberto De Gobbi, Manuel Zorzi, Giovanni Carretta, Luca Leonardi, Stefano Guzzinati, Chiara Trevisiol, Maurizio Cancian, Giulia Cardinali, Federica Michieletto, Ruggero Dittadi, Aline S.C. Fabricio, Massimo Rugge and Francesca Russo in The International Journal of Biological Markers

Genomic footprints of activated telomere maintenance mechanisms in cancer

Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortés-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, Kadir C Akdemir, Eva G Alvarez, Adrian Baez-Ortega, Rameen Beroukhim, Paul C Boutros, David DL Bowtell, Benedikt Brors, Kathleen H Burns, Peter J Campbell, Kin Chan, Ken Chen, Ana Dueso-Barroso … & Christian von Mering
Cancers require telomere maintenance mechanisms for unlimited replicative potential. They achieve this through TERT activation or alternative telomere lengthening associated with ATRX or DAXX loss. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, we dissect whole-genome sequencing data of over 2500 matched tumor-control samples from 36 different tumor types aggregated within the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium to characterize the genomic footprints of these mechanisms. While the...

sj-docx-1-qjp-10.1177_17470218221146540 – Supplemental material for Verbal deception in picture naming

Eduardo Navarrete, Marta De Pedis & Anna Lorenzoni
Supplemental material, sj-docx-1-qjp-10.1177_17470218221146540 for Verbal deception in picture naming by Eduardo Navarrete, Marta De Pedis and Anna Lorenzoni in Quarterly Journal of Experimental Psychology

Consequential-based life cycle assessment of reducing the concentrates supply level in the diet fed to lactating cows in the alpine dairy farming system

Marco Berton, Stefano Bovolenta, Luigi Gallo, Maurizio Ramanzin, Mirco Corazzin & Enrico Sturaro
This study aimed to assess the consequences of reducing the concentrates supply level (CSL) in the lactating cows’ diet on Alpine dairy system’s GHG emissions. Consequential-based Life Cycle Assessment (cLCA) was adopted to assess the consequences within the ‘dairy_system’ (farm plus milk processing) and outside (‘expanded_system’). The functional unit was 1 kg of protein and fat (ProtFat). Data (1-year average) originated from 40 dairy farms in the Alps, collected through farm questionnaires during farm visits....

Consequential-based life cycle assessment of reducing the concentrates supply level in the diet fed to lactating cows in the alpine dairy farming system

Marco Berton, Stefano Bovolenta, Luigi Gallo, Maurizio Ramanzin, Mirco Corazzin & Enrico Sturaro
This study aimed to assess the consequences of reducing the concentrates supply level (CSL) in the lactating cows’ diet on Alpine dairy system’s GHG emissions. Consequential-based Life Cycle Assessment (cLCA) was adopted to assess the consequences within the ‘dairy_system’ (farm plus milk processing) and outside (‘expanded_system’). The functional unit was 1 kg of protein and fat (ProtFat). Data (1-year average) originated from 40 dairy farms in the Alps, collected through farm questionnaires during farm visits....

sj-docx-2-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-2-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

sj-docx-4-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-4-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

Divergent mutational processes distinguish hypoxic and normoxic tumours

Vinayak Bhandari, Constance H Li, Robert G Bristow, Paul C Boutros, Lauri A Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J Adams, Nishant Agrawal, Keun Soo Ahn, Sung-Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C Akdemir, Hikmat Al-Ahmadie, Sultan T Al-Sedairy, Fatima Al-Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B Alexandrov, Adrian Ally, Kathryn Alsop, Eva G Alvarez … & Christian von Mering
Many primary tumours have low levels of molecular oxygen (hypoxia), and hypoxic tumours respond poorly to therapy. Pan-cancer molecular hallmarks of tumour hypoxia remain poorly understood, with limited comprehension of its associations with specific mutational processes, non-coding driver genes and evolutionary features. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumour types, we quantify hypoxia in 1188 tumours spanning...

sj-docx-1-jbm-10.1177_03936155231154663 - Supplemental material for Overordering of tumor marker for outpatients revealed by performance indicators and the impact of a health policy intervention: An observational study using administrative records

Massimo Gion, Roberto De Gobbi, Manuel Zorzi, Giovanni Carretta, Luca Leonardi, Stefano Guzzinati, Chiara Trevisiol, Maurizio Cancian, Giulia Cardinali, Federica Michieletto, Ruggero Dittadi, Aline S.C. Fabricio, Massimo Rugge & Francesca Russo
Supplemental material, sj-docx-1-jbm-10.1177_03936155231154663 for Overordering of tumor marker for outpatients revealed by performance indicators and the impact of a health policy intervention: An observational study using administrative records by Massimo Gion, Roberto De Gobbi, Manuel Zorzi, Giovanni Carretta, Luca Leonardi, Stefano Guzzinati, Chiara Trevisiol, Maurizio Cancian, Giulia Cardinali, Federica Michieletto, Ruggero Dittadi, Aline S.C. Fabricio, Massimo Rugge and Francesca Russo in The International Journal of Biological Markers

Supplemental Table 1.docx

Soraya Puglisi, Anna Calabrese, Francesco Ferraù, Maria Antonia Violi, Marta Laganà, Salvatore Grisanti, Filippo Ceccato, Carla Scaroni, Guido Di Dalmazi, Antonio Stigliano, Barbara Altieri, Letizia Canu, Paola Loli, Rosario Pivonello, Emanuela Arvat, Valentina Morelli, Paola Perotti, Paola Berchialla, Vittoria Basile, Sara Urru, Cristian Fiori, Francesco Porpiglia, Alfredo Berruti, Anna Pia, Giuseppe Reimondo … & Massimo Terzolo
Supplemental Table

Appendix 1.docx

Soraya Puglisi, Anna Calabrese, Francesco Ferraù, Maria Antonia Violi, Marta Laganà, Salvatore Grisanti, Filippo Ceccato, Carla Scaroni, Guido Di Dalmazi, Antonio Stigliano, Barbara Altieri, Letizia Canu, Paola Loli, Rosario Pivonello, Emanuela Arvat, Valentina Morelli, Paola Perotti, Vittoria Basile, Paola Berchialla, Sara Urru, Cristian Fiori, Francesco Porpiglia, Alfredo Berruti, Anna Pia, Giuseppe Reimondo … & Massimo Terzolo
Appendix 1

sj-docx-4-tai-10.1177_20499361221141771 – Supplemental material for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review

Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt & Daniele Donà
Supplemental material, sj-docx-4-tai-10.1177_20499361221141771 for The impact of Antimicrobial Stewardship Programmes in paediatric emergency department and primary care: a systematic review by Giulia Brigadoi, Sara Rossin, Davide Visentin, Elisa Barbieri, Carlo Giaquinto, Liviana Da Dalt and Daniele Donà in Therapeutic Advances in Infectious Disease

Registration Year

  • 2023
    36

Resource Types

  • Text
    36

Affiliations

  • University of Padua
    36
  • Qinghai University Affiliated Hospital
    12
  • University of Tennessee Health Science Center
    12
  • Affiliated Hospital of Southwest Medical University
    12
  • Jiangsu Academy of Agricultural Sciences
    12
  • Affiliated Hospital of Nantong University
    12
  • Charité - University Medicine Berlin
    12
  • National Cancer Centre
    12
  • National Medical Products Administration
    12
  • Hong Kong Polytechnic University
    12