386 Works

sj-docx-1-jpx-10.1177_23743735231161486 - Supplemental material for Development of a Cystic Fibrosis Primary Palliative Care Intervention: Qualitative Analysis of Patient and Family Caregiver Preferences

Melissa J Basile, Lara Dhingra, Stephanie DiFiglia, Jennifer Polo, Russell Portenoy, Janice Wang, Patricia Walker, Brandi Middour-Oxler, Rachel W Linnemann, Catherine Kier, Deborah Friedman, Maria Berdella, Robert Abdullah, Lael M Yonker, Martha Markovitz, Denis Hadjiliadis, Melissa Shiffman, Francine Fischer, Sophie Pollinger, Margot Hardcastle, Nivedita Chaudhary & Anna M Georgiopoulos
Supplemental material, sj-docx-1-jpx-10.1177_23743735231161486 for Development of a Cystic Fibrosis Primary Palliative Care Intervention: Qualitative Analysis of Patient and Family Caregiver Preferences by Melissa J Basile, Lara Dhingra, Stephanie DiFiglia, Jennifer Polo, Russell Portenoy, Janice Wang, Patricia Walker, Brandi Middour-Oxler, Rachel W Linnemann, Catherine Kier, Deborah Friedman, Maria Berdella, Robert Abdullah, Lael M Yonker, Martha Markovitz, Denis Hadjiliadis, Melissa Shiffman, Francine Fischer, Sophie Pollinger, Margot Hardcastle, Nivedita Chaudhary and Anna M Georgiopoulos in Journal of Patient...

Additional file 4 of Rapid and simultaneous detection of multiple pathogens in the lower reproductive tract during pregnancy based on loop-mediated isothermal amplification-microfluidic chip

Xiaofang Xu, Yiguo Jia, Ruolin Li, Yuting Wen, Yuchen Liang, Guangjie Lao, Xiaojuan Liu, Wei Zhou, Huawei Liu, Jiang Xie, Xiaoxia Wang, Wenming Xu & Qun Sun
Additional file 4. PCR primers of target genes.

Additional file 2 of Changes in concentrations of cervicovaginal immune mediators across the menstrual cycle: a systematic review and meta-analysis of individual patient data

Sean M. Hughes, Claire N. Levy, Ronit Katz, Erica M. Lokken, Melis N. Anahtar, Melissa Barousse Hall, Frideborg Bradley, Philip E. Castle, Valerie Cortez, Gustavo F. Doncel, Raina Fichorova, Paul L. Fidel, Keith R. Fowke, Suzanna C. Francis, Mimi Ghosh, Loris Y. Hwang, Mariel Jais, Vicky Jespers, Vineet Joag, Rupert Kaul, Jordan Kyongo, Timothy Lahey, Huiying Li, Julia Makinde, Lyle R. McKinnon … & Florian Hladik
Additional file 2. Amendments to the pre-registered protocol.

Antibody correlates of protection from SARS-CoV-2 reinfection prior to vaccination: a nested case-control within the SIREN study.

Ana Atti, Ferdinando Insalata, Edward J Carr, Ashley D Otter, Javier Castillo-Olivares, Mary Wu, Ruth Harvey, Michael Howell, Andrew Chan, Jonathan Lyall, Nigel Temperton, Diego Cantoni, Kelly da Costa, Angalee Nadesalingam, Andrew Taylor-Kerr, Nipunadi Hettiarachchi, Caio Tranquillini, Jacqueline Hewson, Michelle J Cole, Sarah Foulkes, Katie Munro, Edward JM Monk, Iain D Milligan, Ezra Linley, Meera A Chand … & The Crick COVID Immunity Pipeline Consortium
OBJECTIVES: To investigate serological differences between SARS-CoV-2 reinfection cases and contemporary controls, to identify antibody correlates of protection against reinfection. METHODS: We performed a case-control study, comparing reinfection cases with singly infected individuals pre-vaccination, matched by gender, age, region and timing of first infection. Serum samples were tested for anti-SARS-CoV-2 spike (anti-S), anti-SARS-CoV-2 nucleocapsid (anti-N), live virus microneutralisation (LV-N) and pseudovirus microneutralisation (PV-N). Results were analysed using fixed effect linear regression and fitted into conditional...

Analysis of the effect of exogenous auxin on the regulatory relationship between miRNAs and their target genes in rose using high-throughput sequencing

Yiqing Wang, Rong Ding, Kezhong Zhang & Jinteng Cui
Rose (Rosa hybrida L.) is one of the major cut flowers in the world. Studying the molecular mechanism of auxin regulation in growth is of great significance for enhancing the understanding of the growth and development processes in rose and informing accurate exogenous auxin application in rose production. However, the response mechanism of rose to miRNA-mediated auxin signal transduction is unclear. In this study, rose plants were treated with IAA, and 75 known miRNAs and...

sj-docx-1-tag-10.1177_17562848231155023 – Supplemental material for An explainable artificial intelligence system for diagnosing Helicobacter Pylori infection under endoscopy: a case–control study

Mengjiao Zhang, Jie Pan, Jiejun Lin, Ming Xu, Lihui Zhang, Renduo Shang, Liwen Yao, Yanxia Li, Wei Zhou, Yunchao Deng, Zehua Dong, Yijie Zhu, Xiao Tao, Lianlian Wu & Honggang Yu
Supplemental material, sj-docx-1-tag-10.1177_17562848231155023 for An explainable artificial intelligence system for diagnosing Helicobacter Pylori infection under endoscopy: a case–control study by Mengjiao Zhang, Jie Pan, Jiejun Lin, Ming Xu, Lihui Zhang, Renduo Shang, Liwen Yao, Yanxia Li, Wei Zhou, Yunchao Deng, Zehua Dong, Yijie Zhu, Xiao Tao, Lianlian Wu and Honggang Yu in Therapeutic Advances in Gastroenterology

Additional file 1 of Implementation of an educational intervention to improve medical student cost awareness: a prospective cohort study

Sarah D Tait, Sachiko M Oshima, Harold J Leeras, Alexander Gunn, Melissa Sarver, Funda Gunes & Rachel A. Greenup
Additional file 1. Study Timeline.

Additional file 2 of Implementation of an educational intervention to improve medical student cost awareness: a prospective cohort study

Sarah D Tait, Sachiko M Oshima, Harold J Leeras, Alexander Gunn, Melissa Sarver, Funda Gunes & Rachel A. Greenup
Additional file 2. Baseline Survey.

Additional file 1 of BRASD trial: biomechanical reposition techniques in anterior shoulder dislocation—a randomized multicenter clinical trial

David N. Baden, Martijn H. Roetman, Tom Boeije, Nieke Mullaart, Ralph Boden, Roderick M. Houwert, Marilyn Heng, Rolf H. H. Groenwold & Olivier A. J. van der Meijden
Additional file 1. Consort checklist BRASD.

Additional file 1 of LoFTK: a framework for fully automated calculation of predicted Loss-of-Function variants and genes

Abdulrahman Alasiri, Konrad J. Karczewski, Brian Cole, Bao-Li Loza, Jason H. Moore, Sander W. van der Laan, Folkert W. Asselbergs, Brendan J. Keating & Jessica van Setten
Additional file 1: Supplementary Table 1. False positive and false negative values from matching the LoF variants between exome and subgrouped imputed genotypes data.Supplementary Table 2. Association of selected positive control LoF genes with UKBB phenotypes. Supplementary Figure 1. The workflow for achieving the optimal imputation quality measure.

Additional file 3 of Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics

Ayshwarya Subramanian, Mikhail Alperovich, Yiming Yang & Bo Li
Additional file 3. Supplementary figure legends and supplementary figures.

Additional file 1 of Which is the best femoral implant in children with osteogenesis imperfecta? a retrospective cohort study of 783 procedures

Hongjiang Yang, Bo Li, Cong Xing, Shijie Gao, Wenbiao Zhu, Yang Xiong, Xiuzhi Ren & Guangzhi Ning
Additional file 1: Supplementary Fig 1. AP femur radiographs of the plate and screws (a-c), the telescopic rod (d-f), the non-elongating rod (g-i) and the elastic nail (j-m). The preoperative radiographs (a, d, g, j) and postoperative radiographs (b, e, h, k) of the plate group, the telescopic nail group, the non-elongating rod group and the elastic nail group were shown respectively. Refracture happened in two ends of the plate (c), refracture happened in proximal...

Conversion of Dioscorea zingiberensis saponins to prosapogenin A by enzymatic hydrolysis

Chengyu Yang, Bo Li, Jinwei Zhou, Yufei Chen, Guohua Xia, Yuping Shen, Jixuan Chen, Jiali Shao, Yaya Yang & Huan Yang
Prosapogenin A is a secondary saponin in Dioscorea zingiberensis, and it showed remarkable pharmacological effects. Due to very low content and lack of well-developed biotransformation, its preparation was not efficient and clean. This study aims to establish an eco-friendly strategy for preparation of Prosapogenin A from plant material. Physical separation was employed to recycle starch and cellulose, and then D101 resin and polyamide packed-bed column was incorporated for purification of total steroidal saponins (TSS). After...

Additional file 2 of Upregulated complement receptors correlate with Fc gamma receptor 3A-positive natural killer and natural killer-T cells in neuromyelitis optica spectrum disorder

Shuhei Nishiyama, Amy E. Wright, Itay Lotan, Takahisa Mikami, Friedemann Paul, Masashi Aoki & Michael Levy
Additional file 2: Figure S2. Analysis of TCR Vα24-Jα18-positive NKT cells. The downstream analysis of NKT cells with TCR Vα24-Jα18-positive gating among the NMOSD group showed significantly higher CD83 expression against the Normal Control group (D).

Additional file 34 of Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis

Stavroula Kanoni, Sarah E. Graham, Yuxuan Wang, Ida Surakka, Shweta Ramdas, Xiang Zhu, Shoa L. Clarke, Konain Fatima Bhatti, Sailaja Vedantam, Thomas W. Winkler, Adam E. Locke, Eirini Marouli, Greg J. M. Zajac, Kuan-Han H. Wu, Ioanna Ntalla, Qin Hui, Derek Klarin, Austin T. Hilliard, Zeyuan Wang, Chao Xue, Gudmar Thorleifsson, Anna Helgadottir, Daniel F. Gudbjartsson, Hilma Holm, Isleifur Olafsson … & Gina M. Peloso
Additional file 34. Review history.

Additional file 2 of Rapid qualitative analysis approach to stakeholder and client interviews to inform mobile-based HIV testing in the U.S. Deep South

Madeline C. Pratt, Oluwaseyi O. Isehunwa, Ingrid V. Bassett, Mirjam-Colette Kempf, Bretia Gordon & Lynn T. Matthews
Additional file 2. Interview Guide for HIV Testing Clients.

Additional file 3 of Rapid qualitative analysis approach to stakeholder and client interviews to inform mobile-based HIV testing in the U.S. Deep South

Madeline C. Pratt, Oluwaseyi O. Isehunwa, Ingrid V. Bassett, Mirjam-Colette Kempf, Bretia Gordon & Lynn T. Matthews
Additional file 3. Big Data Stakeholder Interview Summary.

Additional file 3 of Rapid qualitative analysis approach to stakeholder and client interviews to inform mobile-based HIV testing in the U.S. Deep South

Madeline C. Pratt, Oluwaseyi O. Isehunwa, Ingrid V. Bassett, Mirjam-Colette Kempf, Bretia Gordon & Lynn T. Matthews
Additional file 3. Big Data Stakeholder Interview Summary.

Additional file 1 of CYP46A1 activation by low-dose efavirenz enhances brain cholesterol metabolism in subjects with early Alzheimer’s disease

Alan J. Lerner, Steven E. Arnold, Erin Maxfield, Aaron Koenig, Maria E. Toth, Brooke Fortin, Natalia Mast, Bianca A. Trombetta, John Denker, Andrew A. Pieper, Curtis Tatsuoka, Sangeetha Raghupathy & Irina A. Pikuleva
Additional file 1: Supplemental methods. Supplemental Table 1. Summary of visits and evaluations common for both clinical sites and specific for the MGH site. SC, screening visit; BL, baseline visit; PC, phone call; CV, clinic visit; DC, early discontinuation visit; W, week; *, MGH site only; ** unscheduled visit; 24HC, 24-hydroxycholesterol. Supplemental Fig. 1. A tree showing the screening, enrollment, randomization, and outcome of subjects in the efavirenz clinical trial. UHCMC, Brain Health and Memory...

Additional file 1 of Association of sleep apnea and depressive symptoms among US adults: a cross-sectional study

Mei Li, Xue Zou, Hongbin Lu, Fang Li, Yang Xin, Wenwen Zhang, Bo Li & Ying Wang
Additional file 1: Supplementary Table. The result of the goodness of fit.

Additional file 1 of Automated Breast Ultrasound (ABUS)-based radiomics nomogram: an individualized tool for predicting axillary lymph node tumor burden in patients with early breast cancer

Yu Chen, Yongwei Xie, Bo Li, Hua Shao, Ziyue Na, Qiucheng Wang & Hui Jing
Additional file 1: S1. The details of R software used in this study.

Additional file 2 of Automated Breast Ultrasound (ABUS)-based radiomics nomogram: an individualized tool for predicting axillary lymph node tumor burden in patients with early breast cancer

Yu Chen, Yongwei Xie, Bo Li, Hua Shao, Ziyue Na, Qiucheng Wang & Hui Jing
Additional file 2: Table S1. The details of radiomic features.

Additional file 1 of Automated Breast Ultrasound (ABUS)-based radiomics nomogram: an individualized tool for predicting axillary lymph node tumor burden in patients with early breast cancer

Yu Chen, Yongwei Xie, Bo Li, Hua Shao, Ziyue Na, Qiucheng Wang & Hui Jing
Additional file 1: S1. The details of R software used in this study.

Additional file 2 of Automated Breast Ultrasound (ABUS)-based radiomics nomogram: an individualized tool for predicting axillary lymph node tumor burden in patients with early breast cancer

Yu Chen, Yongwei Xie, Bo Li, Hua Shao, Ziyue Na, Qiucheng Wang & Hui Jing
Additional file 2: Table S1. The details of radiomic features.

Late Permian rift-related volcanic rocks from the Zhongba Terrane, Southern Tibet: implications for the opening of the Neotethys

Siqi Xiao, Yalin Li, Juan He, Chengshan Wang, Haiyang He, Jianbo Cheng, Shuai Li & Qiyu Wang
The questions of how and when the Neotethys Ocean opened are crucial for understanding the evolution of the Tethys Realm and the break-up of Gondwana. However, the evolution of the Neotethys remains controversial. Herein, we report the zircon U–Pb ages, whole-rock major as well as trace elements, and Sr–Nd isotopic data for the basaltic volcanic rocks from the Zhongba Terrane in the western Yalung–Zangbo Suture Zone. The results demonstrate that the Saga basalts were extruded...

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