534 Works

Additional file 1 of Integrated proteogenomic characterization reveals an imbalanced hepatocellular carcinoma microenvironment after incomplete radiofrequency ablation

Zheng-Rong Shi, Yu-Xin Duan, Fang Cui, Zhong-Jun Wu, Mao-Ping Li, Pei-Pei Song, Qi-Ling Peng, Wen-Tao Ye, Kun-Li Yin, Mei-Qing Kang, Yan-Xi Yu, Jian Yang, Wei Tang & Rui Liao
Additional file 1 Figure S1. Sequence data qualitycontrol before transcriptomics analysis. A-B: Representativeimagines showing error rate distribution along sequencedata (reads). C-D: Representative pie graphs showing the classification of raw readsfilter. E-F: Representative imagines showing bases content alongsequence reads. Figure S2. Genomemapping, gene expression distribution and pearson correlation between samples.A-B: Representative pie graphs showing thepercentage of genome regions based on the reads mapping. C: box plotdisplaying the distribution of gene expression levels in different samplesafter calculating...

Plastin 3 down-regulation augments the sensitivity of MDA-MB-231 cells to paclitaxel via the p38 MAPK signalling pathway

Yan Ma, Wenjia Lai, Minzhi Zhao, Chunyan Yue, Fanghao Shi, Ren Li & Zhiyuan Hu
Plastin 3 (PLS3) overexpression may serve as a marker for predicting chemotherapeutic outcomes in drug-resistant cancer cells, but the mechanism is unclear. Herein, we show that the down-regulation of PLS3 by PLS3 gene silencing augments the sensitivity of MDA-MB-231 triple-negative breast cancer cells to paclitaxel. Interestingly, a low concentration of paclitaxel was able to induce strong apoptosis in the PLS3-silenced cells. Further study revealed that p38 MAPK signalling was responsible for the increased sensitivity to...

Plastin 3 down-regulation augments the sensitivity of MDA-MB-231 cells to paclitaxel via the p38 MAPK signalling pathway

Yan Ma, Wenjia Lai, Minzhi Zhao, Chunyan Yue, Fanghao Shi, Ren Li & Zhiyuan Hu
Plastin 3 (PLS3) overexpression may serve as a marker for predicting chemotherapeutic outcomes in drug-resistant cancer cells, but the mechanism is unclear. Herein, we show that the down-regulation of PLS3 by PLS3 gene silencing augments the sensitivity of MDA-MB-231 triple-negative breast cancer cells to paclitaxel. Interestingly, a low concentration of paclitaxel was able to induce strong apoptosis in the PLS3-silenced cells. Further study revealed that p38 MAPK signalling was responsible for the increased sensitivity to...

Structure-based design of oligomeric receptor-binding domain (RBD) recombinant proteins as potent vaccine candidates against SARS-CoV-2

Ting Zhang, Ningchen Zheng, Zhirong Wang & Xuemei Xu
The receptor-binding domain (RBD) of SARS-CoV-2 S protein is proved to be the major target of neutralizing antibodies. However, on the S protein, only a portion of epitopes in RBD can be effectively displayed with dynamic changes in spatial conformations. Using RBD fragment as antigen can better expose the neutralizing epitopes, but the immunogenicity of RBD monomer is suboptimal. Multimeric display of RBD molecules is a feasible strategy to optimize RBD-based vaccines. In this study,...

Structure-based design of oligomeric receptor-binding domain (RBD) recombinant proteins as potent vaccine candidates against SARS-CoV-2

Ting Zhang, Ningchen Zheng, Zhirong Wang & Xuemei Xu
The receptor-binding domain (RBD) of SARS-CoV-2 S protein is proved to be the major target of neutralizing antibodies. However, on the S protein, only a portion of epitopes in RBD can be effectively displayed with dynamic changes in spatial conformations. Using RBD fragment as antigen can better expose the neutralizing epitopes, but the immunogenicity of RBD monomer is suboptimal. Multimeric display of RBD molecules is a feasible strategy to optimize RBD-based vaccines. In this study,...

Additional file 2 of Immunogenicity and antigenicity of a conserved fragment of the rhoptry-associated membrane antigen of Plasmodium vivax

Jieyun Ge, Qiubo Wang, Gangcheng Chen, Kokouvi Kassegne, Hangye Zhang, Jiali Yu, Jianxia Tang, Bo Wang, Feng Lu, Jun Cao, Eun-Taek Han & Yang Cheng
Additional file 2: Table S1.Information on the imported isolates of P. vivax samples used in this study.

N-doped carbon dots from pericarpium citri reticulatae for wide linear range sensing of hydroquinone

Peng Du, Zhengkun Chu, Jing Zhang, Jieyu Ma, Feng Cao & Jie Liu
Hydroquinone (H2Q) present in water is becoming a growing problem in both daily life and industry, with various harmful effects on human health. Therefore, the detection of H2Q is very important. The Carbon dot-based sensor is considered an effective method to detect H2Q. In this work, Pericarpium citri reticulatae carbon dots (P-CDs) were synthesized by a one-pot hydrothermal method for wide linear sensing of H2Q. An orthogonal test was used to expand the active site...

Additional file 1 of Immune landscape and prognostic index for pancreatic cancer based on TCGA database and in vivo validation

Pan-ling Xu, Chien-shan Cheng, Ting Wang, Shu Dong & Ping Li
Supplementary Material 1

Additional file 1 of m6A RNA methylation regulator-based signature for prognostic prediction and its potential immunological role in uterine corpus endometrial carcinoma

Fang Fang, Peipei Wang, Haoyu Huang, Mingquan Ye, Xiaocen Liu & Qingqing Li
Additional file 1: Supplementary Fig. 1 m6A gene expression between UCEC patients with or without mutations in m6A regulators. *, P < 0.05; **, P < 0.01.

Additional file 1 of m6A RNA methylation regulator-based signature for prognostic prediction and its potential immunological role in uterine corpus endometrial carcinoma

Fang Fang, Peipei Wang, Haoyu Huang, Mingquan Ye, Xiaocen Liu & Qingqing Li
Additional file 1: Supplementary Fig. 1 m6A gene expression between UCEC patients with or without mutations in m6A regulators. *, P < 0.05; **, P < 0.01.

Additional file 1 of NAMPT encapsulated by extracellular vesicles from young adipose-derived mesenchymal stem cells treated tendinopathy in a “One-Stone-Two-Birds” manner

Guanghao Wu, Qihang Su, Jie Li, Chao Xue, Jie Zhu, Qiuchen Cai, Jingbiao Huang, Shaoyang Ji, Biao Cheng & Hengan Ge
Additional file 1: Figure S1. Identification of ADMSCyoung and ADMSCold by flow cytometric analysis by surface markers of ADMSCs.Figure S2. H&E staining of live and kidney cells in the control, TGF-β1, TGF-β1+ADMSCyoung-EV and TGF-β1+ADMSCold-EV tenocyte groups 4 weeks after treatment. Scale bar = 100 μm. Figure S3. Blood biochemistry examination of the control, TGF-β1, TGF-β1+ADMSCyoung-EV and TGF-β1+ADMSCold-EV tenocyte groups 4 weeks after treatment, n = 4. Blood chemistry data suggested no hepatic disorder induced by...

Additional file 1 of Variations in lower limb alignments indicate pelvic tilt after total hip arthroplasty

Kangming Chen, Jinyan Wu, Gangyong Huang, Changquan Liu, Chao Shen, Junfeng Zhu, Yang Li, Tao Li, Fei Xiao, Jianping Peng, Xiuguo Han, Xinhai Zhang, Jun Xia & Xiaodong Chen
Additional file 1. Correcting horizontal distortions of cups on lateral EOS films.

Additional file 1 of PET-based radiomics visualizes tumor-infiltrating CD8 T cell exhaustion to optimize radiotherapy/immunotherapy combination in mouse models of lung cancer

Ying Zhang, Hui-Hui Hu, Shi-Hong Zhou, Wu-Yan Xia, Yan Zhang, Jian-Ping Zhang, Xiao-Long Fu & Wen Yu
Additional file 1: Fig S1. Representative flow cytometry gating strategy for early-exhausted (PD-1int) and terminally-exhausted (PD-1hi) CD8+ T cells isolated from the tumor of a LLC mouse.

Additional file 2 of PET-based radiomics visualizes tumor-infiltrating CD8 T cell exhaustion to optimize radiotherapy/immunotherapy combination in mouse models of lung cancer

Ying Zhang, Hui-Hui Hu, Shi-Hong Zhou, Wu-Yan Xia, Yan Zhang, Jian-Ping Zhang, Xiao-Long Fu & Wen Yu
Additional file 2: Fig S2. Calibration curves of radiomics model.

Additional file 2 of PET-based radiomics visualizes tumor-infiltrating CD8 T cell exhaustion to optimize radiotherapy/immunotherapy combination in mouse models of lung cancer

Ying Zhang, Hui-Hui Hu, Shi-Hong Zhou, Wu-Yan Xia, Yan Zhang, Jian-Ping Zhang, Xiao-Long Fu & Wen Yu
Additional file 2: Fig S2. Calibration curves of radiomics model.

Additional file 3 of PET-based radiomics visualizes tumor-infiltrating CD8 T cell exhaustion to optimize radiotherapy/immunotherapy combination in mouse models of lung cancer

Ying Zhang, Hui-Hui Hu, Shi-Hong Zhou, Wu-Yan Xia, Yan Zhang, Jian-Ping Zhang, Xiao-Long Fu & Wen Yu
Additional file 3. Table S1. Summary of radiomic features.

Additional file 1 of Association between insulin resistance and abnormal menstrual cycle in Chinese patients with polycystic ovary syndrome

Jiali Niu, Meiyin Lu & Bin Liu
Additional file 1: Table S1. Relationship between IR and other clinical phenotypes in patients with PCOS.

Additional file 1 of Integrated single-molecule real-time sequencing and RNA sequencing reveal the molecular mechanisms of salt tolerance in a novel synthesized polyploid genetic bridge between maize and its wild relatives

Xiaofeng Li, Xingyu Wang, Qiangqiang Ma, Yunfeng Zhong, Yibo Zhang, Ping Zhang, Yingzheng Li, Ruyu He, Yang Zhou, Yang Li, Mingjun Cheng, Xu Yan, Yan Li, Jianmei He, Muhammad Zafar Iqbal, Tingzhao Rong & Qilin Tang
Additional file 1: Fig. S1. Putative of transcription factors (TFs) and transcriptional regulators (TRs) by iTAK. Fig. S2. Prediction of long-non-coding RNAs (LncRNA) by CPC (Coding Potential Calculator), CNCI (Coding-Non-Coding Index) software and pfam protein structure domain database. Fig. S3. MTP Iso-Seq data mapped onto the maize reference genome (RefGen.v4). (A) 10 chromosomes of maize. (B) Transcript density of T. dactyloides in each chromosome. (C) Transcript density of Teosinte (D) Gene density of sorghum in...

Additional file 34 of Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis

Stavroula Kanoni, Sarah E. Graham, Yuxuan Wang, Ida Surakka, Shweta Ramdas, Xiang Zhu, Shoa L. Clarke, Konain Fatima Bhatti, Sailaja Vedantam, Thomas W. Winkler, Adam E. Locke, Eirini Marouli, Greg J. M. Zajac, Kuan-Han H. Wu, Ioanna Ntalla, Qin Hui, Derek Klarin, Austin T. Hilliard, Zeyuan Wang, Chao Xue, Gudmar Thorleifsson, Anna Helgadottir, Daniel F. Gudbjartsson, Hilma Holm, Isleifur Olafsson … & Gina M. Peloso
Additional file 34. Review history.

Additional file 1 of Positive correlation between hypertensive retinopathy and albuminuria in hypertensive adults

Jun Li, Wenbo Zhang, Liang Zhao, Jing Zhang, Haicheng She, Ying Meng, Yadi Zhang, Xiaopeng Gu, Yan Zhang, Jianping Li, Xianhui Qin, Binyan Wang, Xiping Xu, Fanfan Hou, Genfu Tang, Rongfeng Liao, Lishun Liu, Meiqing Huang, Xinlei Bai, Yong Huo & Liu Yang
Additional file 1: Supplementary Table 1. The Keith-Wagener-Barker classification for hypertensive retinopathy.

Additional file 2 of FOXD3 confers chemo-sensitivity in ovarian cancer through a miR-335/DAAM1/myosin II axis-dependent mechanism

Shufen Wang, Yan Ma, Yi Hu, Xia Zhao, Yilin Li, Shuming Ouyang & Guifang Luo
Additional file 2: Supplementary Table 1. Primer sequences for RT-qPCR.

Additional file 2 of AMLnet, A deep-learning pipeline for the differential diagnosis of acute myeloid leukemia from bone marrow smears

Zebin Yu, Jianhu Li, Xiang Wen, Yingli Han, Penglei Jiang, Meng Zhu, Minmin Wang, Xiangli Gao, Dan Shen, Ting Zhang, Shuqi Zhao, Yijing Zhu, Jixiang Tong, Shuchong Yuan, HongHu Zhu, He Huang & Pengxu Qian
Additional file 2. Figure S1. Bone marrow smear diagram and representative images of AML subtypes; Figure S2. Distribution of dual-center test dataset in the study; Figure S3. AMLnet diagnostic pipeline; Figure S4. Performance of the AMLnet on image and patient level in the test set; Figure S5. Visualization of AMLnet Gradients in Discriminating AML Subtypes M1, M2a, M2b, and M4; Table S1. Characteristics of patients in the developmental and dual-center test datasets; Table S2. Subtype-wise...

Additional file 1 of Raltitrexed enhanced antitumor effect of anlotinib in human esophageal squamous carcinoma cells on proliferation, invasiveness, and apoptosis

Hongchao Zhen, Jizheng Tian, Guangxin Li, Pengfei Zhao, Ying Zhang, Juanjuan Che & Bangwei Cao
Additional file 1.

Additional file 1 of The relationship between psychological conditions and recurrence of benign paroxysmal positional vertigo: a retrospective cohort study

Yuexin Shu, Nannan Liao, Fang Fang, Qiuling Shi, Ning Yan & Yaoyue Hu
Additional file 1: Supplementary Table 1. Baseline characteristics of BBPV patients with and without psychological conditions. Supplementary Table 2. Co-occurrence of psychological conditions. Supplementary Table 3. Survival table of the first BPPV recurrence in rBPPV patients with OCD (N=19). Supplementary Table 4. Cox regression results on the associations between anxiety and the first recurrence of BPPV, comparing BPPV patients with anxiety only with BPPV patients with no anxiety, insomnia or OCD. Supplementary Table 5. Cox...

Additional file 1 of Unravelling the genetic diversity and population structure of common walnut in the Iranian Plateau

Robabeh Shahi Shavvon, Hai-Ling Qi, Mohammad Mafakheri, Pen-Zheng Fan, Hong-Yu Wu, Fatemeh Bazdid Vahdati, Hanady S. Al-Shmgani, Yue-Hua Wang & Jie Liu
Additional file 1: Table S1. Detailed sampling information of 27 Juglans regia populations across the Iranian Plateau. Table S2. Detailed information for the 31 pairs of primers and their combination for multiplex PCR. Table S3. Population pairwise FST and Nei’s genetic distance (DA). Lower-left part: FST; upper-right part: DA. Table S4. Gene flow (Nm) among populations. Fig. S1. Neighbor-joining tree of 508 individuals, colors correspond to Fig. 4. The designation of G1 and G2 corresponds...

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