94 Works

Additional file 1 of Association between decreased ipsilateral renal function and aggressive behavior in renal cell carcinoma

Jang Hee Han, Seung-hwan Jeong, Sanghun Han, Hyeong Dong Yuk, Ja Hyeon Ku, Cheol Kwak, Hyeon Hoe Kim & Chang Wook Jeong
Additional file 1: Supplementary Table 1. Comparison of characteristics between maintained and decreased ipsilateral SRF in synchronous metastatic renal cell carcinoma.

Additional file 1 of Molecular subgrouping of medulloblastoma in pediatric population using the NanoString assay and comparison with immunohistochemistry methods

Joo Whan Kim, Sung-Hye Park, Seung Ah Choi, Seung-Ki Kim, Eun Jung Koh, Jae-Kyung Won, Sun Mo Nam & Ji Hoon Phi
Additional file 1.

Patterns of vestibular function in patients with dizziness after COVID-19 vaccination; dual tertiary referral center study

Joonsik Yoon, Min Seok Song, Sang-Yeon Lee, Moo Kyun Park, Jun Ho Lee, Seung Ha Oh, Min Young Lee & Myung-Whan Suh
Although dizziness is a common symptom after vaccination, the mechanism, and prognosis are not well understood. This study aimed to investigate patients with dizziness after COVID-19 vaccination by analyzing objective information. A retrospective study of patients who visited the outpatient clinics of two institutes with a complaint of dizziness occurring within 72 h after a COVID-19 vaccination. In most cases, patients experienced only a single event of dizziness, and the subjective symptom was relieved after...

Emerging Enterococcus isolates in postoperative endophthalmitis by selection pressure of fluoroquinolones: an 11-year multicenter and experimental study

Jiyeun Kate Kim, Ki Yup Nam, In Young Chung, Woo Jin Jeung, Yoon Hyung Kwon, Jung Min Park, Yong Seop Han, Ji Eun Lee, Ik Soo Byon, Sung Hu Park, Hyun Wong Kim, Kang Yun Park, Hee Sung Yoon, Indal Park, Han Woo Kim & Sang Joon Lee
Postoperative endophthalmitis (PE) is the devastating complication that frequently results in vision loss. Recently, enterococcus have emerged as a major cause of PE in several countries and resulted in poor visual outcome. However, the reason remains elusive. We investigate whether selection pressure of fluoroquinolone exerts effects on microorganism profiles isolated from PE. Medical records of patients who were diagnosed with PE at eight resident training institutions between January 2004 and December 2015 were reviewed. The...

Additional file 1 of Impact of mental disorders on the risk of atrial fibrillation in patients with diabetes mellitus: a nationwide population-based study

Nan Young Bae, So-Ryoung Lee, Eue-Keun Choi, Hyun Jin Ahn, Hyo-Jeong Ahn, Soonil Kwon, Kyung-Do Han, Kyu-Na Lee, Seil Oh & Gregory Y. H. Lip
Additional file 1: Table S1. Definition of covariates and outcomes. Table S2. Baseline characteristics of study patients with each mental disorder. Table S3. Sensitivity analysis. Table S4. Subgroup analysis of mental disorders. Table S5. Subgroup analysis of depression, insomnia, and anxiety.

Supplementary document for Axial Profiling of Interferometric Scattering Enables an Accurate Determination of Nanoparticle Size - 6288691.pdf

katerina zambochova, il-buem lee, Jin-Sung Park, Seok-Cheol Hong & Minhaeng Cho
experimental setup diagram, theory, analysis scheme, supporting data for Fig.3,4,5

Supplementary document for Axial Profiling of Interferometric Scattering Enables an Accurate Determination of Nanoparticle Size - 6284320.pdf

katerina zambochova, il-buem lee, Jin-Sung Park, Seok-Cheol Hong & Minhaeng Cho
experimental setup diagram, theory, analysis scheme, supporting data for Fig.3,4,5

Additional file 2 of Desensitizing toothpastes for dentin sealing and tertiary dentin formation in vitro and in vivo: a comparative analysis

Juhyun Lee, Geumbit Hwang, Hyeri Gug, Ji-Hyun Lee, Su-Jin Park & Joo-Cheol Park
Additional file 2: Supplementary Table 2. Raw data of microleakage analysis.

Additional file 2 of Enterotypical Prevotella and three novel bacterial biomarkers in preoperative stool predict the clinical outcome of colorectal cancer

Ji-Won Huh, Min Jung Kim, Jaesik Kim, Hyeon Gwon Lee, Seung-Bum Ryoo, Ja-Lok Ku, Seung-Yong Jeong, Kyu Joo Park, Dokyoon Kim, Jihyun F. Kim & Ji Won Park
Additional file 2: Figure S1. Indicator profiles by enterotype.

Additional file 6 of Enterotypical Prevotella and three novel bacterial biomarkers in preoperative stool predict the clinical outcome of colorectal cancer

Ji-Won Huh, Min Jung Kim, Jaesik Kim, Hyeon Gwon Lee, Seung-Bum Ryoo, Ja-Lok Ku, Seung-Yong Jeong, Kyu Joo Park, Dokyoon Kim, Jihyun F. Kim & Ji Won Park
Additional file 6: Figure S5. Progression-free survival by the differentially enriched microbial pathways.

sj-docx-2-cll-10.1177_09636897221147920 – Supplemental material for Fenoldopam Mesylate Enhances the Survival of Mesenchymal Stem Cells Under Oxidative Stress and Increases the Therapeutic Function in Acute Kidney Injury

Seo Yeon Jo, Hye Jin Cho & Tae Min Kim
Supplemental material, sj-docx-2-cll-10.1177_09636897221147920 for Fenoldopam Mesylate Enhances the Survival of Mesenchymal Stem Cells Under Oxidative Stress and Increases the Therapeutic Function in Acute Kidney Injury by Seo Yeon Jo, Hye Jin Cho and Tae Min Kim in Cell Transplantation

Optimization of extraction conditions for functional compounds from thinned unripe apple using β-cyclodextrin-based ultrasound-assisted extraction

Eun Ji Lee & Kyung Young Yoon
Unripe apples contain more functional compounds than ripe apples and thus demonstrate significant potential for use as functional food materials. In this study, the conditions for the extraction of functional compounds from unripe apples were optimized using the response surface methodology. A Box–Behnken design was used to investigate the effects of three independent variables (β-cyclodextrin concentration, extraction time, and extraction temperature) on the total polyphenol content (TPC), chlorogenic acid content (CAC), and 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical...

Combined burden and functional impact tests for cancer driver discovery using DriverPower

Shimin Shuai, Federico Abascal, Samirkumar B Amin, Gary D Bader, Pratiti Bandopadhayay, Jonathan Barenboim, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach, J Lynn Fink, Nuno A Fonseca, Joan Frigola, Carlo Gambacorti-Passerini, Dale W Garsed … & L van’t Veer
The discovery of driver mutations is one of the key motivations for cancer genome sequencing. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumour types, we describe DriverPower, a software package that uses mutational burden and functional impact evidence to identify driver mutations in coding and non-coding sites within cancer whole genomes. Using a total of 1373 genomic features...

Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Federico Abascal, Samirkumar B Amin, Gary D Bader, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach … & L van’t Veer
Multi-omics datasets represent distinct aspects of the central dogma of molecular biology. Such high-dimensional molecular profiles pose challenges to data interpretation and hypothesis generation. ActivePathways is an integrative method that discovers significantly enriched pathways across multiple datasets using statistical data fusion, rationalizes contributing evidence and highlights associated genes. As part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumor types, we integrated...

Pathway and network analysis of more than 2500 whole cancer genomes

Matthew A Reyna, David Haan, Marta Paczkowska, Lieven PC Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose MG Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, Federico Abascal, Samirkumar B Amin … & L van’t Veer
The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past decade. However, non-coding cancer driver mutations are less well-characterized and only a handful of recurrent non-coding mutations, most notably TERT promoter mutations, have been reported. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancer across 38 tumor types, we perform multi-faceted pathway and network analyses of non-coding...

Pathway and network analysis of more than 2500 whole cancer genomes

Matthew A Reyna, David Haan, Marta Paczkowska, Lieven PC Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose MG Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, Federico Abascal, Samirkumar B Amin … & L van’t Veer
The catalog of cancer driver mutations in protein-coding genes has greatly expanded in the past decade. However, non-coding cancer driver mutations are less well-characterized and only a handful of recurrent non-coding mutations, most notably TERT promoter mutations, have been reported. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancer across 38 tumor types, we perform multi-faceted pathway and network analyses of non-coding...

Additional file 1 of Does living liver donors’ underestimation about surgical outcomes impact on their health-related quality of life after donation?: a descriptive cross-sectional study

Ye Sol Lee, Chin Kang Koh, Nam-Joon Yi, Kyung-Suk Suh & Kwang-Woong Lee
Supplementary Material 1

Additional file 1 of Modulation of bioactive calcium phosphate micro/nanoparticle size and shape during in situ synthesis of photo-crosslinkable gelatin methacryloyl based nanocomposite hydrogels for 3D bioprinting and tissue engineering

Amitava Bhattacharyya, Gopinathan Janarthanan, Taeyang Kim, Shiva Taheri, Jisun Shin, Jihyeon Kim, Hyun Cheol Bae, Hyuk-Soo Han & Insup Noh
Additional file 1: Figure 1. (a) viscosity at shear rate 1 s-1 for different gels with different UV exposure time; Viscosity changes with shear rate for different UV exposure time of different gels, (b) GelMA, (c) CNP + GelMA, (d) CNP (50%) GelMA, and (e) CNP GelMA. Figure 2. MTT assay with MC3T3 cells for the hydrogels and CNP samples, where control is only medium. Figure 3. Phase contrast images on Day 8 of AdMSC...

Theory of mind and hair cortisol in healthy young adults: the moderating effects of childhood trauma

Suonaa Lee, Jung Tak Park, Minji Bang, Suk Kyoon An, Kee Namkoong, Hye Yoon Park & Eun Lee
Background: Experiences of negative social interactions and childhood trauma (CT) can lead to aberrant hypothalamic–pituitary–adrenal functions. Poor theory of mind (ToM) ability is related to increased social stress levels; however, studies on the relationship between ToM and cortisol remain scarce. Objective: This study aimed to evaluate the relationship between ToM and the hair cortisol concentration (HCC) in healthy young adults considering the moderating role of CT. Method: A total of 206 healthy young adults were...

Additional file 1 of Desensitizing toothpastes for dentin sealing and tertiary dentin formation in vitro and in vivo: a comparative analysis

Juhyun Lee, Geumbit Hwang, Hyeri Gug, Ji-Hyun Lee, Su-Jin Park & Joo-Cheol Park
Additional file 1: Supplementary Table 1. Ingredient and content of experimental toothpastes.

Additional file 2 of Desensitizing toothpastes for dentin sealing and tertiary dentin formation in vitro and in vivo: a comparative analysis

Juhyun Lee, Geumbit Hwang, Hyeri Gug, Ji-Hyun Lee, Su-Jin Park & Joo-Cheol Park
Additional file 2: Supplementary Table 2. Raw data of microleakage analysis.

Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Federico Abascal, Samirkumar B Amin, Gary D Bader, Rameen Beroukhim, Johanna Bertl, Keith A Boroevich, Søren Brunak, Peter J Campbell, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, Priyanka Dhingra, Klev Diamanti, Lars Feuerbach … & L van’t Veer
Multi-omics datasets represent distinct aspects of the central dogma of molecular biology. Such high-dimensional molecular profiles pose challenges to data interpretation and hypothesis generation. ActivePathways is an integrative method that discovers significantly enriched pathways across multiple datasets using statistical data fusion, rationalizes contributing evidence and highlights associated genes. As part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2658 cancers across 38 tumor types, we integrated...

Supplementary document for High Gain, Low Noise, Room Temperature 1550 nm GaAsSb/AlGaAsSb Avalanche Photodiodes - 6078036.pdf

Seunghyun Lee, Xiao Jin, Hyemin Jung, Harry Lewis, Yifan Liu, Bingtian Guo, Sri Harsha Kodati, Mariah Schwartz, Christoph Grein & Theodore Ronningen
Information on layer structures

Machine Learning Analysis to Identify Data Entry Errors in Prehospital Patient Care Reports: A Case Study of a National Out-of-Hospital Cardiac Arrest Registry

Dong Hyun Choi, Jeong Ho Park, Young Ho Choi, Kyoung Jun Song, Sungwan Kim & Sang Do Shin
Background: The objective of this study was to develop and validate machine learning models for data entry error detection in a national out-of-hospital cardiac arrest (OHCA) prehospital patient care report database. Methods: Adult OHCAs of presumed cardiac etiology were included. Data entry errors were defined as discrepancies between the coded data and the free-text note documenting the intervention or event; for example, information that was recorded as “absent” in the coded data but “present” in...

Additional file 2 of High tumor hexokinase-2 expression promotes a pro-tumorigenic immune microenvironment by modulating CD8+/regulatory T-cell infiltration

Sehui Kim, Jaemoon Koh, Seung Geun Song, Jeemin Yim, Miso Kim, Bhumsuk Keam, Young Tae Kim, Jihun Kim, Doo Hyun Chung & Yoon Kyung Jeon
Additional file 2: Supplementary Table S1. Clinicopathological features of patients with lung adenocarcinoma subjected to flow cytometry for comprehensive immunoprofiling. Supplementary Table S2. Clinicopathological features of patients with lung adenocarcinoma subjected to immunohistochemistry. Supplementary Table S3. Clinicopathological features of patients with lung squamous cell carcinoma subjected to immunohistochemistry. Supplementary Table S4. Clinicopathological features of patients with colon adenocarcinoma subjected to immunohistochemistry. Supplementary Table S5. Clinicopathological features of non-small cell lung cancer patients with PD-1/PD-L1 blockade...

Registration Year

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Affiliations

  • Seoul National University Hospital
    94
  • Seoul National University
    90
  • Yonsei University
    25
  • University of Pennsylvania
    23
  • Asan Medical Center
    16
  • University of Florida
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  • Hallym University
    11
  • Qinghai University Affiliated Hospital
    10
  • University of Tennessee Health Science Center
    10
  • Affiliated Hospital of Southwest Medical University
    10