3,005 Works

Additional file 1 of Metabolomics to identify fingerprints of carotid atherosclerosis in nonobese metabolic dysfunction-associated fatty liver disease

Congxiang Shao, Lishu Xu, Pingguang Lei, Wei Wang, Shiting Feng, Junzhao Ye & Bihui Zhong
Additional file 1: Figure S1. Chromatogram of top 10 metabolites in the targeted metabolomics analysis. Figure S2. The correlation between the predictive metabolites of CAS [PE (20:2/16:0), PG (18:0/20:4) and de novo lipogenesis (16:0/18:2n-6)] and metabolic index among nonobese MAFLD. Group 1: nonobese MAFLD patients without CAS; Group 2: nonobese MAFLD patients with CAS. Figure S3. The correlation between the predictive metabolites of CAS [PE (20:2/16:0), PG (18:0/20:4) and de novo lipogenesis (16:0/18:2n-6)] and pathological...

Additional file 2 of Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform

Qun-ting Lin, Wei Yang, Xin Zhang, Qi-gang Li, Yong-feng Liu, Qin Yan & Lei Sun
Additional file 2: Fig S1. Fragment size analysis of DNA isolated from medium of HEK293 cells and adult mouse liver cells. a The h293-s1 was the library for h293_s1_GL and h293_s1_NV. The h293-s2 was the library for h293_s2_GL and h293_s2_NV. b The mouse-s1 was the library for mouse_s1_GL and mouse_s1_NV. The mouse-s2 was the library for mouse_s2_GL and mouse_s2_NV.

Additional file 4 of Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform

Qun-ting Lin, Wei Yang, Xin Zhang, Qi-gang Li, Yong-feng Liu, Qin Yan & Lei Sun
Additional file 4: Fig S2. The M bias of h293 samples in pro-cleansing data and post-cleansing data.

Additional file 9 of Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform

Qun-ting Lin, Wei Yang, Xin Zhang, Qi-gang Li, Yong-feng Liu, Qin Yan & Lei Sun
Additional file 9: Fig S5. The methylation pattern of GNB1 genebody 40 loci.

Additional file 4 of Large-scale genomic and transcriptomic profiles of rice hybrids reveal a core mechanism underlying heterosis

Jianyin Xie, Weiping Wang, Tao Yang, Quan Zhang, Zhifang Zhang, Xiaoyang Zhu, Ni Li, Linran Zhi, Xiaoqian Ma, Shuyang Zhang, Yan Liu, Xueqiang Wang, Fengmei Li, Yan Zhao, Xuewei Jia, Jieyu Zhou, Ningjia Jiang, Gangling Li, Miaosong Liu, Shijin Liu, Lin Li, An Zeng, Mengke Du, Zhanying Zhang, Jinjie Li … & Hongliang Zhang
Additional file 4. Review history.

Additional file 3 of Association of plasma lipid metabolism profiles with overall survival for patients with gastric cancer undergoing gastrectomy based on 1H-NMR spectroscopy

Yaopeng Qiu, Zhou Xu, Qingfeng Xie, Renyi Zhang, Luyao Wang, Liying Zhao & Hao Liu
Additional file 3. Supplemental tables. Table S1. The univariate analysis of lipid metabolism biomarkers for OS; Table S2. Multicollinearity test of 5 variables for OS; Table S3. The baseline data of the training cohort and the validation cohort.

Additional file 1 of Carotenoid biosynthesis is associated with low-temperature adaptation in Rhodosporidium kratochvilovae

Rui Guo, Tao Liu, Caina Guo, Gongshui Chen, Jingdie Fan & Qi Zhang
Additional file 1: Supplementary Table S1. The sequences of promoter PRKU6a and promoter PRKU6b. Supplementary Table S2. The sequence of codon-optimized Cas9-NLS-6*His. Table S3. The sequence of sgRNA of RKCrtYB used in the present study. Supplementary Table S4. Primers used in the present study.

Additional file 5 of Cuproptosis regulatory genes greatly contribute to clinical assessments of hepatocellular carcinoma

Changwei Ke, Shejiao Dai, Fangshi Xu, Jia Yuan, Shuting Fan, Yang Chen, Longbao Yang & Yong Li
Additional file 5: Supplementary table 1. The clinical characteristics of TCGA and ICGC cohorts.

Additional file 6 of Cuproptosis regulatory genes greatly contribute to clinical assessments of hepatocellular carcinoma

Changwei Ke, Shejiao Dai, Fangshi Xu, Jia Yuan, Shuting Fan, Yang Chen, Longbao Yang & Yong Li
Additional file 6: Supplementary table 2. The clinical characteristics of GSE14520 and 116174 cohorts.

Additional file 8 of Cuproptosis regulatory genes greatly contribute to clinical assessments of hepatocellular carcinoma

Changwei Ke, Shejiao Dai, Fangshi Xu, Jia Yuan, Shuting Fan, Yang Chen, Longbao Yang & Yong Li
Additional file 8: Supplementary Table 4. The primer lists.

Additional file 9 of Cuproptosis regulatory genes greatly contribute to clinical assessments of hepatocellular carcinoma

Changwei Ke, Shejiao Dai, Fangshi Xu, Jia Yuan, Shuting Fan, Yang Chen, Longbao Yang & Yong Li
Additional file 9: Supplementary Table 5. The specific sequences of sh-DLAT and OE-DLAT.

Additional file 1 of Identification and validation of pyroptosis-related gene landscape in prognosis and immunotherapy of ovarian cancer

Lingling Gao, Feiquan Ying, Jing Cai, Minggang Peng, Man Xiao, Si Sun, Ya Zeng, Zhoufang Xiong, Liqiong Cai, Rui Gao & Zehua Wang
Additional file 1: Figure S1. The workflow of our work.

Additional file 3 of Identification and validation of pyroptosis-related gene landscape in prognosis and immunotherapy of ovarian cancer

Lingling Gao, Feiquan Ying, Jing Cai, Minggang Peng, Man Xiao, Si Sun, Ya Zeng, Zhoufang Xiong, Liqiong Cai, Rui Gao & Zehua Wang
Additional file 3: Figure S4. Characteristics of chemokines, interleukins, interferons, and other cytokines among the threedistinct pyroptosis gene clusters.

Additional file 4 of Identification and validation of pyroptosis-related gene landscape in prognosis and immunotherapy of ovarian cancer

Lingling Gao, Feiquan Ying, Jing Cai, Minggang Peng, Man Xiao, Si Sun, Ya Zeng, Zhoufang Xiong, Liqiong Cai, Rui Gao & Zehua Wang
Additional file 4: Figure S4. Characteristics of chemokines, interleukins, interferons, and other cytokines among the threedistinct pyroptosis gene clusters.

Additional file 5 of Identification and validation of pyroptosis-related gene landscape in prognosis and immunotherapy of ovarian cancer

Lingling Gao, Feiquan Ying, Jing Cai, Minggang Peng, Man Xiao, Si Sun, Ya Zeng, Zhoufang Xiong, Liqiong Cai, Rui Gao & Zehua Wang
Additional file 5: Figure S5. Comprehensive analysis of Pyrsig score in OC.

Additional file 8 of Identification and validation of pyroptosis-related gene landscape in prognosis and immunotherapy of ovarian cancer

Lingling Gao, Feiquan Ying, Jing Cai, Minggang Peng, Man Xiao, Si Sun, Ya Zeng, Zhoufang Xiong, Liqiong Cai, Rui Gao & Zehua Wang
Additional file 8: Figure S8. Relationships between immune checkpoints and GSDMD, GZMB and their prognostic values.

Additional file 8 of Identification and validation of pyroptosis-related gene landscape in prognosis and immunotherapy of ovarian cancer

Lingling Gao, Feiquan Ying, Jing Cai, Minggang Peng, Man Xiao, Si Sun, Ya Zeng, Zhoufang Xiong, Liqiong Cai, Rui Gao & Zehua Wang
Additional file 8: Figure S8. Relationships between immune checkpoints and GSDMD, GZMB and their prognostic values.

Additional file 5 of MYBL2 regulates de novo purine synthesis by transcriptionally activating IMPDH1 in hepatocellular carcinoma cells

Jun-Zhang Zhao, Wei Wang, Tao Liu, Lei Zhang, De-Zheng Lin, Jia-Yin Yao, Xiang Peng, Gang Jin, Tian-Tian Ma, Jin-Bo Gao, Fang Huang, Jun Nie & Qing Lv
Additional file 5.

Additional file 1 of The development of a cSMART-based integrated model for hepatocellular carcinoma diagnosis

Tong Wu, Rong Fan, Jian Bai, Zhao Yang, Yun-Song Qian, Lu-Tao Du, Chun-Ying Wang, Ying-Chao Wang, Guo-Qing Jiang, Dan Zheng, Xiao-Tang Fan, Bo Zheng, Jing-Feng Liu, Guo-Hong Deng, Feng Shen, He-Ping Hu, Yi-Nong Ye, Qing-Zheng Zhang, Jing Zhang, Yan-Hang Gao, Jie Xia, Hua-Dong Yan, Min-Feng Liang, Yan-Long Yu, Fu-Ming Sun … & Lei Chen
Additional file 1: Methods. Supplementary figures and legends. Table S1: Basic information of enrolled patients. Table S2: Brief summary of all participants. Table S13: Performance of single mutation site in the diagnosis of HCC.

Additional file 2 of Longitudinal association of remnant cholesterol with joint arteriosclerosis and atherosclerosis progression beyond LDL cholesterol

Zhiyuan Wu, Jinqi Wang, Haiping Zhang, Huiying Pan, Zhiwei Li, Yue Liu, Xinlei Miao, Ze Han, Xiaoping Kang, Xia Li, Xiuhua Guo, Lixin Tao & Wei Wang
Additional file 2: Fig. S1. Proportions of concordance/discordance among individuals according to LDL-C clinical cutpoints. Fig. S2. Progression trajectories of separate baPWV and ABI. Fig. S3. The scatter plots between remnant cholesterol and LDL cholesterol stratified by age and sex.

Additional file 1 of Classification, risk factors, and outcomes of patients with progressive hemorrhagic injury after traumatic brain injury

Ren Wang, Dian-Xu Yang, Jun Ding, Yan Guo, Wan-Hai Ding, Heng-Li Tian & Fang Yuan
Additional file 1: Supplemental table 1. Multivariate logistic analysis of risk factors associated with progressive hemorrhagic injury after traumatic brain injury*. Supplemental table 2. Multivariate logistic analysis of risk factors associated with progressive intraparenchymal contusion or hematoma*. Supplemental table 3. Multivariate logistic analysis of risk factors associated with progressive epidural hematoma*. Supplemental table 4. Subtypes of progressive hemorrhagic injury (PHI) and their outcomes after propensity score matching (PSM).

Additional file 1 of Classification, risk factors, and outcomes of patients with progressive hemorrhagic injury after traumatic brain injury

Ren Wang, Dian-Xu Yang, Jun Ding, Yan Guo, Wan-Hai Ding, Heng-Li Tian & Fang Yuan
Additional file 1: Supplemental table 1. Multivariate logistic analysis of risk factors associated with progressive hemorrhagic injury after traumatic brain injury*. Supplemental table 2. Multivariate logistic analysis of risk factors associated with progressive intraparenchymal contusion or hematoma*. Supplemental table 3. Multivariate logistic analysis of risk factors associated with progressive epidural hematoma*. Supplemental table 4. Subtypes of progressive hemorrhagic injury (PHI) and their outcomes after propensity score matching (PSM).

Additional file 4 of High yield engineered nanovesicles from ADSC with enriched miR-21-5p promote angiogenesis in adipose tissue regeneration

Di Sun, Shan Mou, Lifeng Chen, Jie Yang, Rongrong Wang, Aimei Zhong, Wei Wang, Jing Tong, Zhenxing Wang & Jiaming Sun
Additional file 4: Fig. S4. Negligible effect of ADSC-NVs on cell senescence in vitro. HUVECs were exposed to H2O2 (50 μM, 2 h) to induce senescence and then incubated with 0 μg/mL or 20 μg/mL ADSC-NVs for 24 h. (A) Representative images of SA β-gal staining of HUVECs. Scale bar: 100 μm. (B) Quantitation of SA β-gal-positive HUVECs (n = 3 per group). Besides, HUVECs cultured in complete medium were incubated with or without 20...

Additional file 5 of High yield engineered nanovesicles from ADSC with enriched miR-21-5p promote angiogenesis in adipose tissue regeneration

Di Sun, Shan Mou, Lifeng Chen, Jie Yang, Rongrong Wang, Aimei Zhong, Wei Wang, Jing Tong, Zhenxing Wang & Jiaming Sun
Additional file 5: Fig. S5. Fat graft with ADSC-EVs. BALB/c nude mice were administered injection of a mixture of fat granules and ADSC-EVs (20 μg/mL). The grafts were harvested at 12 weeks post-transplantation for further analysis. (A) Macroscopic images of the fat grafts. Scale bar: 1 cm. Quantitative analysis of grafts shows no significant difference of volume (B) and weight (C) between ADSC-NVs (20 μg/mL) group and ADSC-EVs (20 μg/mL) group (n = 5 per...

Characteristic biflavonoids from Daphne kiusiana var. atrocaulis (Rehd.) F. Maekawa

Zisong Bai, Di Zhou, Qingqi Meng, Mingxia Fang, Gang Chen, Yue Hou & Ning Li
Structurally diverse biflavonoids have attracted significant research interest for drug discovery over past decades. Biflavonoid oriented phytochemistry research on the stems of Daphne kiusiana var. atrocaulis (Rehd.) F. Maekawa was carried out, which resulted in the identification of ten major effective components (1–10), including the undescribed biflavonoids, daphnodorin Q (1), daphnodorin R (2) and flavane, daphnekiuslin A (10). The known structures were identified from this herb for the first time. Their structures were determined by...

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