370 Works

Robust neutralization assay based on SARS-CoV-2 S-protein-bearing vesicular stomatitis virus (VSV) pseudovirus and ACE2-overexpressing BHK21 cells

Hua-Long Xiong, Yang-Tao Wu, Jia-Li Cao, Ren Yang, Ying-Xia Liu, Jian Ma, Xiao-Yang Qiao, Xiang-Yang Yao, Bao-Hui Zhang, Ya-Li Zhang, Wang-Heng Hou, Yang Shi, Jing-Jing Xu, Liang Zhang, Shao-Juan Wang, Bao-Rong Fu, Ting Yang, Sheng-Xiang Ge, Jun Zhang, Quan Yuan, Bao-Ying Huang, Zhi-Yong Li, Tian-Ying Zhang & Ning-Shao Xia
The global pandemic of coronavirus disease 2019 (COVID-19) is a disaster for human society. A convenient and reliable neutralization assay is very important for the development of vaccines and novel drugs. In this study, a G protein-deficient vesicular stomatitis virus (VSVdG) bearing a truncated spike protein (S with C-terminal 18 amino acid truncation) was compared to that bearing the full-length spike protein of SARS-CoV-2 and showed much higher efficiency. A neutralization assay was established based...

Risk of Ophthalmic Adverse Events in Patients Treated with Immune Checkpoint Inhibitor Regimens: A Systematic Review and Meta-analysis

Yan-Li Hou, Di-Ya Wang, Jie-Xuan Hu, Ru-Yue Tian, Wei Wang, Qiang Su, Hongyang Li & Yan-Ling Wang
Immune checkpoint inhibitors (ICIs) -induced adverse events (AEs) have been reported affecting almost all human organs. However, studies about ocular AEs are few. A meta-analysis was performed to evaluate the risks of ICI-related ophthalmic AEs compare to chemotherapy. Methods: Eligible studies were selected from phase II/III randomized controlled trials investigating ICIs. The data were analyzed by R software and Stata. Odds ratio of treatment-related AE (trAEs) and nonspecific ophthalmic trAEs (NS-trAEs) were lower for PD-1/PD-L1...

Synergy of alanine and gentamicin to reduce nitric oxide for elevating killing efficacy to antibiotic-resistant Vibrio alginolyticus

Su-fang Kuang, Yue-tao Chen, Jia-jie Chen, Xuan-xian Peng, Zhuang-gui Chen & Hui Li
The present study explored the cooperative effect of both alanine (Ala) and gentamicin (Gent) on metabolic mechanisms by which exogenous Ala potentiates Gent to kill antibiotic-resistant Vibrio alginolyticus. To test this, GC-MS-based metabolomics was used to characterize Ala-, Gent- and both-induced metabolic profiles, identifying nitric oxide (NO) production pathway as the most key clue to understand metabolic mechanisms. Gent, Ala and both led to low, lower and lowest activity of total nitric oxide synthase (tNOS)...

sj-pdf-1-prf-10.1177_02676591211031468 – Supplemental material for Establishment of a venovenous extracorporeal membrane oxygenation in a rat model of acute respiratory distress syndrome

Yongnan Li, Jian Huang, Rongzhi Zhang, Shixiong Wang, Xingdong Cheng, Pengbin Zhang, Kerong Zhai, Wei Wang, Debin Liu & Bingren Gao
Supplemental material, sj-pdf-1-prf-10.1177_02676591211031468 for Establishment of a venovenous extracorporeal membrane oxygenation in a rat model of acute respiratory distress syndrome by Yongnan Li, Jian Huang, Rongzhi Zhang, Shixiong Wang, Xingdong Cheng, Pengbin Zhang, Kerong Zhai, Wei Wang, Debin Liu and Bingren Gao in Perfusion

sj-pdf-1-prf-10.1177_02676591211031468 – Supplemental material for Establishment of a venovenous extracorporeal membrane oxygenation in a rat model of acute respiratory distress syndrome

Yongnan Li, Jian Huang, Rongzhi Zhang, Shixiong Wang, Xingdong Cheng, Pengbin Zhang, Kerong Zhai, Wei Wang, Debin Liu & Bingren Gao
Supplemental material, sj-pdf-1-prf-10.1177_02676591211031468 for Establishment of a venovenous extracorporeal membrane oxygenation in a rat model of acute respiratory distress syndrome by Yongnan Li, Jian Huang, Rongzhi Zhang, Shixiong Wang, Xingdong Cheng, Pengbin Zhang, Kerong Zhai, Wei Wang, Debin Liu and Bingren Gao in Perfusion

Two cSNPs sites in the fatty acid-binding protein 4 (FABP4) gene and their association analysis with body measurement data in five Chinese cattle breeds

Jiawei Xu, Xian Liu, Cuicui Cai, Woyu Su, Jianliang Xie, Zijing Zhang, Peng Yang, Shijie Lyu, Zhiming Li, Chuzhao Lei, Hong Chen, Eryao Wang, Baorui Ru & Yongzhen Huang
Single nucleotide polymorphisms (SNPs) include the transition and transversion of a single base. In this study, we found two cSNPs (rs110757796 and rs110652478) in the FABP4 (fatty acid-binding protein 4) gene and tested their population genetic parameters in five Chinese cattle breeds. FABP4 is a key marker molecule for lipid production. It plays a crucial role in the growth and development of animals. Thus, we also analyze the association between the two cSNPs of FABP4...

Isolation and structure elucidation of two new cassane derivatives from the seed kernels of Caesalpinia sinensis

Lian Lian, Ye Yang, Dan-Dan Guo, Yan-Fang Yan, Hui-Yuan Gao, Xian-Zhe Li & Miao Wang
Two new cassane-type derivatives (1–2), together with three known compounds (3–5), were isolated from the seed kernels of Caesalpinia sinensis. Their structures were elucidated on the basis of interpretation of comprehensive spectroscopic data, including HRESIMS and 1D/2D NMR spectroscopy, and the absolute configuration were established by means of ECD calculation. Compound 2, possessing a 16-degradative cassane skeleton, was rarely encountered in cassane diterpenoids isolated from the genus Caesalpinia. All compounds were evaluated for their anti-inflammatory...

Effect of Ocular Magnification on Macular Choroidal Thickness Measurements Made Using Optical Coherence Tomography in Children

Junjie Deng, Jiali Jin, Bo Zhang, Siqi Zhang, Jingjing Wang, Shuyu Xiong, Tianyu Cheng, Kun Liu, Jiannan Huang, Xiangui He & Xun Xu
To evaluate the relationship between ocular magnification correction and macular choroidal thickness (ChT) measurements in children, and to demonstrate when ocular magnification correction is necessary. Chinese children aged 6–9 years with various refractive statuses were included. Swept-source optical coherence tomography was used to measure macular ChT. A self-designed program was adopted to simulate ChT changes in each sector of the ETDRS grid in the macula under various simulated axial lengths (ALs). ChT measurements were not...

The clinical burden of extremely preterm birth in a large medical records database in the United States: complications, medication use, and healthcare resource utilization

Csaba Siffel, Andrew K. Hirst, Sujata P. Sarda, Hong Chen, Jeannette Ferber, Michael W. Kuzniewicz & De-Kun Li
Approximately 5% of global preterm births are extremely premature (EP), defined as occurring at less than 28 weeks gestational age. Advances in care have led to an increase in the survival of EP infants during the neonatal period. However, EP infants have a higher risk of developing complications such as bronchopulmonary dysplasia (BPD), intraventricular hemorrhage (IVH), and retinopathy of prematurity (ROP). BPD and other respiratory morbidities are particularly prevalent among this population. To understand the...

A SERS-based immunochromatographic assay for ultrasensitive and quantitative detection of florfenicol using long wavelength absorption of Au nanocubes

Ying Liu, Ting Zhou, Penghui Zhou, Hanwen Liu, Jianguo Li & Anping Deng
An immunochromatographic assay (ICA) based on surface-enhanced Raman scattering (SERS) for ultrasensitive and quantitative detection of florfenicol (FF) in food samples was developed. Au nanocubers (AuNCs) with long wavelength absorption were synthesised, characterised and used as the substrate in SERS-ICA. Immunoprobe was prepared by linking Raman reporter and the antibody against FF on AuNCs. The SERS-ICA was completed in 15 min. By measuring the Raman intensities on T lines, quantitative detection of FF was achieved....

Additional file 1 of Hemin-incorporating DNA nanozyme enabling catalytic oxygenation and GSH depletion for enhanced photodynamic therapy and synergistic tumor ferroptosis

Xiaoxiong Xiao, Min Chen, Yuchen Zhang, Liang Li, Ying Peng, Wenhu Zhou & Junyu Li
Additional file 1. Characterization of DF formation by size, TEM and gel electrophoresis; colloidal stability of the nanoparticles; kinetics of drug release; catalytic multiple turn-over of the nanozymes; PDT effect; body weight change during treatments; H&E staining of the major organs.

Supply-side drivers of phosphorus emissions from phosphorus supply chains in China

Jing Zhang, Qiumeng Zhong, Yadong Yu, Jetashree, Xuechun Yang, Cuiyang Feng, Hui Li & Sai Liang
Human activities interfere with natural Phosphorus (P) cycles by introducing increased levels of P emissions to air, land, and water. A supply-side analysis of P supply chains and associated P emissions can provide insights into underlying economic activities and transitions responsible for human-induced P emissions. Taking the mainland China as the case, this study constructs time-series physical input-output tables to describe P supply chains during 1949–2012. Subsequently, it identifies critical products and influencing factors of...

Effect of Ocular Magnification on Macular Choroidal Thickness Measurements Made Using Optical Coherence Tomography in Children

Junjie Deng, Jiali Jin, Bo Zhang, Siqi Zhang, Jingjing Wang, Shuyu Xiong, Tianyu Cheng, Kun Liu, Jiannan Huang, Xiangui He & Xun Xu
To evaluate the relationship between ocular magnification correction and macular choroidal thickness (ChT) measurements in children, and to demonstrate when ocular magnification correction is necessary. Chinese children aged 6–9 years with various refractive statuses were included. Swept-source optical coherence tomography was used to measure macular ChT. A self-designed program was adopted to simulate ChT changes in each sector of the ETDRS grid in the macula under various simulated axial lengths (ALs). ChT measurements were not...

Additional file 1 of Gene expression profiles provide insights into the survival strategies in deep-sea mussel (Bathymodiolus platifrons) of different developmental stages

Junrou Huang, Peilin Huang, Jianguo Lu, Nengyou Wu, Genmei Lin, Xilin Zhang, Hong Cao, Wei Geng, Bin Zhai, Cuiling Xu & Zhilei Sun
Additional file 1: Fig. S1. Length distribution of the unigenes. Fig. S2. Expression level distribution of the unigenes. Fig. S3. Correlations between samples. Fig. S4. Clustering of samples. Fig. S5. Venn plot of the expressed genes in each tissues. The overlapping regions represent common expressed genes in the same tissue of different individuals. Fig. S6. Number of DEGs in each COG category. Fig. S7. Number of DEGs in the corresponding GO terms. Fig. S8. Significantly...

Effects of Two Common Binders on Decomposition Mechanism of HMX Molecule Under Linear Temperature Rise

Wanxiao Guo, Yaning Li, Chunyu Pan, Ning Wang, Zhiwei Han, Boliang Wang & Han Ma
The effects of two common binders (BR and F binder) on the thermal decomposition of HMX molecules during linear heating were studied by molecular dynamics simulation. It was found that both binders can induce the decomposition reaction of HMX molecules earlier, promote the conversion of intermediate products to stable products, and reduce the activation energy and potential energy barrier of the system. The induction of the binder in the composite system makes the initial decomposition...

Additional file 20 of Proteogenomic insights into the biology and treatment of pancreatic ductal adenocarcinoma

Yexin Tong, Mingjun Sun, Lingli Chen, Yunzhi Wang, Yan Li, Lingling Li, Xuan Zhang, Yumeng Cai, Jingbo Qie, Yanrui Pang, Ziyan Xu, Jiangyan Zhao, Xiaolei Zhang, Yang Liu, Sha Tian, Zhaoyu Qin, Jinwen Feng, Fan Zhang, Jiajun Zhu, Yifan Xu, Wenhui Lou, Yuan Ji, Jianyuan Zhao, Fuchu He, Yingyong Hou … & Chen Ding
Additional file 20: Fig. S20. HOGA1 regulated LARP7 expression, related to Fig. 8. A The association of the mRNA expression of HOGA1with prognosis (log-rank test). B Boxplot showing the differential expression of HOGA1 between tumors and NATs in CPTAC cohort (Student’s t test). C Expression of HOGA1, LARP7, CDK1, CCNB1, and CCNB2, in tumor tissues were detected by western blot analysis. N = non-tumor adjacent tissue, T = tumor tissue. D The impacts of HOGA1...

Additional file 2 of Proteogenomic insights into the biology and treatment of pancreatic ductal adenocarcinoma

Yexin Tong, Mingjun Sun, Lingli Chen, Yunzhi Wang, Yan Li, Lingling Li, Xuan Zhang, Yumeng Cai, Jingbo Qie, Yanrui Pang, Ziyan Xu, Jiangyan Zhao, Xiaolei Zhang, Yang Liu, Sha Tian, Zhaoyu Qin, Jinwen Feng, Fan Zhang, Jiajun Zhu, Yifan Xu, Wenhui Lou, Yuan Ji, Jianyuan Zhao, Fuchu He, Yingyong Hou … & Chen Ding
Additional file 2: Fig. S2. Phosphoproteomic characterization, related to Fig. 1. A. MS2 spectrums of the YAP1 at S109 and RB1 at S807. B. IHC staining of YAP1 at S109 and RB1 at S807 in PDAC tumor tissues and NATs. C. Boxplot indicting the phosphosite expression of YAP1_pS109 and RB1_pS807 between tumors and NATs.

Additional file 10 of Proteogenomic insights into the biology and treatment of pancreatic ductal adenocarcinoma

Yexin Tong, Mingjun Sun, Lingli Chen, Yunzhi Wang, Yan Li, Lingling Li, Xuan Zhang, Yumeng Cai, Jingbo Qie, Yanrui Pang, Ziyan Xu, Jiangyan Zhao, Xiaolei Zhang, Yang Liu, Sha Tian, Zhaoyu Qin, Jinwen Feng, Fan Zhang, Jiajun Zhu, Yifan Xu, Wenhui Lou, Yuan Ji, Jianyuan Zhao, Fuchu He, Yingyong Hou … & Chen Ding
Additional file 10: Fig. S10. Protein expression changes in PANC-1 cell lines after ADAM9 knocked down and the co-expressed proteins of ADAM9, related to Fig. 5. A The schematic work flow of validation experiments for the protein expression changes after ADAM9 knocked down. B The volcano plot showed the proteins that significantly altered between PANC-1 cells with ADAM9 KD and Scrambled siRNA. The GO processes enriched by proteins downregulated in ADAM9 KD cell lines are...

Additional file 8 of Evolution of the CBL and CIPK gene families in Medicago: genome-wide characterization, pervasive duplication, and expression pattern under salt and drought stress

Xiao-Xia Zhang, Xiao-Long Ren, Xiao-Tong Qi, Zhi-Min Yang, Xiao-Lei Feng, Tian Zhang, Hui-Jie Wang, Peng Liang, Qi-Ying Jiang, Wen-Jun Yang, Yuan Fu, Min Chen, Zhi-Xi Fu & Bo Xu
Additional file 8: Figure S3. Synteny analysis of CBL and CIPK genes among four allelic chromosomes in M. sativa spp. sativa. CBL genes are in red, and CIPK genes are in gray. Red lines represent the collinearity of duplicated CBL genes, and gray lines indicate the collinearity of duplicated CIPK genes. Four sets of chromosomes in chromosome circles are represented by four different colors, light green for the first set of chromosomes (MsaX.1), light blue...

Additional file 2 of STEAP3 can predict the prognosis and shape the tumor microenvironment of clear cell renal cell carcinoma

Jiyue Wu, Qing Bi, Xiang Zheng, Huawei Cao, Changzhen Hao, Zejia Sun & Wei Wang
Additional file 2: Table S2: Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analysis of the STEAP3-related genes.

Additional file 1 of Self-assembly of DNA nanostructure containing cell-specific aptamer as a precise drug delivery system for cancer therapy in non-small cell lung cancer

Ning Wang, Chang Yu, Tingting Xu, Dan Yao, Lingye Zhu, Zhifa Shen & Xiaoying Huang
Additional file 1: Scheme S1. The self-assembly process from single-strand DNA to a structural unit. The detail base sequences of three single-strand DNA, including S6 (aptamer), PP (palindrome probe), and Linker, are displayed in the pattern diagram. Figure S1. 8% PAGE image showing the influence of palindrome sequences on the synthesis of DNA nanostructure. CP (common probe) was instead of PP (palindrome probe). C-NS represented the synthetic products from self-assembly system in the absence of...

Additional file 2 of Interaction of miR-200a-3p with YAP regulates cell proliferation and metastasis differentially in HPV-positive and HPV-negative cervical cancer cells

Hong Chen, Lingling Gu, Min Zhang, Huifen Chen, Hong Liao, Xueping Cao, Lu Yu & Jun Zhang
Additional file 2: Fig. 2H. Full-length blots in Figure 2H C33A (left) and Siha (right) cells. The red solid lines are the figures in the manuscript. Fig. 2J. Full-length blots in Figure 2J C33A (left) and Siha (right) cells. The red solid lines are the figures in the manuscript. Supplementary Fig. S2. Full-length blots in Supplementary Fig S2. The red solid lines are the figures in the manuscript.

sj-docx-1-isp-10.1177_00207640221141784 – Supplemental material for Social anxiety and depression symptoms in Chinese left-behind children after the lifting of COVID-19 lockdown: A network analysis

Kuiliang Li, Lei Ren, Lei Zhang, Chang Liu, Mengxue Zhao, Xiaoqing Zhan, Ling Li, Xi Luo & Zhengzhi Feng
Supplemental material, sj-docx-1-isp-10.1177_00207640221141784 for Social anxiety and depression symptoms in Chinese left-behind children after the lifting of COVID-19 lockdown: A network analysis by Kuiliang Li, Lei Ren, Lei Zhang, Chang Liu, Mengxue Zhao, Xiaoqing Zhan, Ling Li, Xi Luo and Zhengzhi Feng in International Journal of Social Psychiatry

Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease

Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M Allan, Alessandra Granata, Sanjay Sinha, Tao Wang, Hugh S Markus, Alexandra Naba, Roman Fischer, Tom Van Agtmael, Karen Horsburgh & M Zameel Cader
The extracellular matrix (ECM) is a key interface between the cerebrovasculature and adjacent brain tissues. Deregulation of the ECM contributes to a broad range of neurological disorders. However, despite this importance, our understanding of the ECM composition remains very limited mainly due to difficulties in its isolation. To address this, we developed an approach to extract the cerebrovascular ECM from mouse and human post-mortem normal brain tissues. We then used mass spectrometry with off-line high-pH...

Additional file 1 of Molecular characterization and phylogenetic analysis of porcine epidemic diarrhea virus strains circulating in China from 2020 to 2021

Hong Zhuang, Leilei Sun, Xiaobo Wang, Min Xiao, Long Zeng, Haoran Wang, Hongfu Yang, Feng Lin, Chuang Wang, Liting Qin & Chengbao Wang
Additional file 1: Table S1. Information of PEDV strains obtained in this study. The information including strain name, collection date, collection region, S gene length, virus isolation and accession number.

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  • Institute of Botany
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  • Shanghai Jiao Tong University
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  • Chinese Academy of Medical Sciences & Peking Union Medical College
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  • Huazhong University of Science and Technology
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